Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTATTTCTTCATGAGGGGAAGGTTGTTTGGGAAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgttacacaccacagtttctgttgttttttcaagtatgctgggagattagttttatccgaccagttttatcatctggtgttatcttctggattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G868168_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g46740.2 (Oryza sativa), 5'ss of exon 10
GTTGCTATTTCTTCATGAGGGGAAGGTTGTTTGGGAAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgttacacaccacagtttctgttgttt---tttcaagtatgctgggagattagttttatccgaccagttttatcatctggtgttatcttctggattgcag
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GTTGTTATTTCTCCATGAGGGGAAGGTAGTGTGGGAAGGAATGACACAAGAATTTACTACATCAACAAATCCTATTGTAAAACAGgtaatgcagtaatgtcttaactgtgtgcctcacaagaaccaagtaaccttaatatactcgatcttgtgtctcactccatcgccatttgatat-ttgtag
upper sequence: GRMZM5G868168_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA18G47600.1 (Glycine max), 5'ss of exon 9
-GTTGCTATTTCTTCATGAGGGGAAGGTTGTTTGGGAAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgttacacaccacagtttctgttgttttttcaagta-tgctgggagattagtt--ttatccgaccagttttatcatctggtgttatcttctggattgcag-
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GATTGTTGTTTCTACACAAGGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAggttagttgttttgctttgtaagggttaacaatgagctgtttctgaattctttaattgtgggacctcaatttccttatgg-atgatatttaaatataccat
upper sequence: GRMZM5G868168_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 9
GTTGCTATTTCTTCATGAGGGGAAGGTTGTTTGGGAAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgttacacaccacagtttctgttgttttttcaagtatgctgggagattagttttatccgaccagttttatcatctggtg--ttatcttctggattgcag-----
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ATTGTTGTTTCTACACAAAGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACTAATCCAATTGTCCAGCAGgtta---gttttgctttgtaagggttaacaatgagttgtttctgaatgcttttattgtaggacctcaatttccttatggatgatatttaaatataccatttag
upper sequence: GRMZM5G868168_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTGCTATTTCTTCATGAGGGGAAGGTTGTTTGGGAAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgt---tacacaccacagtttctgttgttttttcaagtatgctgggagattagttttatccgaccagtttta-tcatctggtgttatcttctggattgcag
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GTTATTGTTTCTGTATGAAGGAAAGATCGTTTGGCAAGGAATGACACATGAATTCACAACCTCAACTAATCCAATAGTTCAACAGgtcccttcttttcacatgttcacatctaatttcaa---cattgaagtacttgggatg------cagtgttagtcattcatttttgttgtgtatctcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31356046|gb|CD440403.1|CD440403EST: AAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAG TTTGCATCTGGTAGCTTGGATGGACCCATAAAATATTTTTGAAGACCCAAC
genomic: AAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgttacacacc ... tggattgcagTTTGCATCTGGTAGTTTGGATGGACCCATAAAATATTTTTGAAGACCCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTATTTCTTCATGAGGGGAAGGTTGTTTGGGAAGGAATGACACATGAGTTCACAACATCAGCTAATCCAATTGTTCAACAGgttacacaccacagtttctgttgttttttcaagtatgctgggagattagttttatccgaccagttttatcatctggtgttatcttctggattgcag
- - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT