1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTTACAACCACTCCAGCACTTGCAATACCAAAGGCTATCGCAAATGCTGGATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattgagtttcttttactcacattttttgtaagccttttgttatgcattgagagtttattttacttattactttttttgtaataatgtcttttttacttgtcaatatag
species | Zea mays |
transcript | GRMZM5G866758_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|30088105|gb|CB886310.1|CB886310
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|101395308|gb|EB819584.1|EB819584
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|211193824|gb|FL472434.1|FL472434
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAGCTTCTTGGAATTCCTTCAEST: gi|78091101|gb|DV519475.1|DV519475
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|31909501|gb|CD650950.1|CD650950
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|110525002|gb|EE029186.1|EE029186
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|166435185|gb|EG112283.1|EG112283
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: AGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|93281704|gb|EB673968.1|EB673968
genomic: AGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|78087734|gb|DV516127.1|DV516127
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|76921549|gb|DV168617.1|DV168617
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|33095848|gb|CF055842.1|CF055842
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: CATCCCGTGCTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|31909499|gb|CD650949.1|CD650949
genomic: CATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|76284259|gb|DV023827.1|DV023827
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|30306466|gb|CD001139.1|CD001139
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|149016999|gb|EE154316.2|EE154316
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|76936635|gb|DV174816.1|DV174816
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|211206261|gb|FL471226.1|FL471226
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTGGGGTCATCCCGTGTGGATTTCTTTGAGATTAATGAAGCATTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|29544660|gb|CB605040.1|CB605040
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|32864390|gb|CF004072.1|CF004072
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|76017958|gb|DT945128.1|DT945128
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCAEST: gi|32862142|gb|CF001824.1|CF001824
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
EST: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCG GCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
genomic: GATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattg ... gtcaatatagGCTGTTGCGCTTGCAAATCAAAAACTTCTTGGAATTCCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTACAACCACTCCAGCACTTGCAATACCAAAGGCTATCGCAAATGCTGGATTAGAGTCATCCCGTGTTGATTTCTATGAGATTAATGAAGCCTTTTCGgtatgcattgagtttcttttactcacattttttgtaagccttttgttatgcattgagagtttattttacttattactttttttgtaataatgtcttttttacttgtcaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC