1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
CTGTTGCCAGAGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactctagctgttagtgtttggacatgtaatgtgcatttgatttgatacaaggctaaatgttcacaactaacatacatagtacacgattgatttgcacagcatttgtttattccatagctattttgggctttggctcttggaaaacctaaacatatacacttttctttttgcag
species | Zea mays |
transcript | GRMZM5G844195_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAG GTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATATEST: gi|18963630|gb|BM660543.1|BM660543
genomic: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactct ... ctttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATAT
EST: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAG GTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATATEST: gi|19058197|gb|BM736864.1|BM736864
genomic: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactct ... ctttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATAT
EST: AGTTCTTGCAAGGTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAG GTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATATEST: gi|18963632|gb|BM660544.1|BM660544
genomic: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactct ... ctttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATAT
EST: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAG GTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATATEST: gi|19057727|gb|BM736394.1|BM736394
genomic: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactct ... ctttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATAT
EST: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAG GTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATAT
genomic: AGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactct ... ctttttgcagGTGATAGAAGCCCAACCTGACATGCCAGTTGTTGGAGCCATAACTCTATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTGCCAGAGTTCTTGCAAGTTGAAGCTTTTGCTAAGTTCAGTAATGCTATTGGAAAGgtaaaactctagctgttagtgtttggacatgtaatgtgcatttgatttgatacaaggctaaatgttcacaactaacatacatagtacacgattgatttgcacagcatttgtttattccatagctattttgggctttggctcttggaaaacctaaacatatacacttttctttttgcag
- - - - - - - - - - - TTGAAG
- - - - - - - - - - - TGAAGC