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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGCAAAGCGGGGCATGAGTGGCGGGCCTTTGCCGTTGCGCAACCGGAGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaacaagctccgtagactttggtgtcattgtacctgagtatcttcttaaacaaacttagaagtcagtatggggtcagtgcctcagtttgagtaca...

Basic information

species Zea mays
transcript GRMZM5G843914_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G843914_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g55890.1 (Oryza sativa), 5'ss of exon 11
GGTGAGCAAAGCGGGGCATGAGTGGCGGGCCTTTGCCGTTGCGCAACCGGAGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagc--aacaagctccgtagactttggtgt------cattgtacctgagtatcttcttaaacaaacttagaagtcagtatggggtcagtgcctcagtttgagtaca
 ||| ||||||  ||||||| |||||  |||||||||||||| ||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||  |    | |   |  | || |||||      ||||||||||   | | || |||||| |||  |    ||  | |    |||  |||  |  |||||||  
AGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATCAGAGCCTCTTTTACGCTTTGCGCTTTGTTCAGGAAGCCATTCTGATCCCGCGgtaagctcattgcgttttctcaaatt-ggtgtcatcttcattgtacctcgatctatt-ttaaactaaccaatgcttcctttta---tcaa-gccata-cttgagtaa-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29576777|gb|CB616889.1|CB616889
EST:     AGCCTCTTTTGCGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|71431420|gb|DR812470.1|DR812470
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|74241581|gb|DT649495.1|DT649495
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|71431421|gb|DR812471.1|DR812471
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|88756881|gb|DY541022.1|DY541022
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTT
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTT
EST: gi|89760782|gb|DY689054.1|DY689054
EST:     AGCTTCTTTTACGTTTTGCGTTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|78123668|gb|DV542052.1|DV542052
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|166692809|gb|EG322476.1|EG322476
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGTCTGTTCCACCAGCTGG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGG
EST: gi|211322727|gb|FL462751.1|FL462751
EST:     TGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: TGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|60357556|gb|DN224529.1|DN224529
EST:     AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
genomic: AGCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCGgtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAAG
EST: gi|211041651|gb|FL024100.1|FL024100
EST:     GCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGCNG                         GTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGGCGGCCAA
genomic: GCCTCTTTTACGCTTTGCGCTTTGTTCCGGCAGCCATTCTGATCCCGC-Ggtaagcaaca ... ttgcatgcagGTGAGGGTGTACACTCCGAAGCGGCTGTTCCACCAGCTGGAGTCGGCCAA