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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgcttccgcttgtgccattgtgcagacatcacgcgctaaatcaagttcaatcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgtctgcag

Basic information

species Zea mays
transcript GRMZM5G836910_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G836910_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g55420.1 (Oryza sativa), 5'ss of exon 10
CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgc-tgcttccgcttgtgccattgtgcagacatcacgcgctaaatcaagttcaatcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgt--ctgcag
 || || ||||||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||| ||   |||||    || |  ||  |   | || ||      |  ||| | |    | |    || || |     |||     || |||   ||  |   | || | |      || | ||||||   |  || ||   |||||
TTATGATAGTTTGTCTGCAAAGGACGACAGTGGCAAGGACTGGTCTTTCATTCTGAGGCAGATAGGCATGTTCTCCTACACGGGCTTGAACAAAACTCAGgtgacatatgctttaaatttt--cacagataacacttccattcttctatcgact--ggtgatttctc-catatataatgtgactgcaaacactgcaattcacacaatacactaagtattcttaatttgattcgtttgtatttgcag

upper sequence: GRMZM5G836910_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT4G31990.4 (Arabidopsis thaliana), 5'ss of exon 11
CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgcttccgcttgtgccattgtgcagacatcacgcgctaaatcaagttcaatcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgtctgcag
 || || ||  |   | | || ||||||||||| ||||||||||| |||||||||| ||| |||||||||||||| | ||||||| | |||||||| ||||||    |||   |  || |   | |   ||||   |      |    |  ||| |  |    |      | | | || ||     |     | |    ||                                          
GTATGATAGCCTCGTTTCAAAAGACAAGAGCGGGAAGGACTGGTCCTTCATTCTGAAGCAAATTGGCATGTTCTCTTTCACCGGCCTAAACAAAGCTCAGgta----tgccaacaattttaatactacacagattccct----ttggccttgtttagacttgtggtttgaagtttgtgctgttttcttttggtaacgagcag-----------------------------------------

upper sequence: GRMZM5G836910_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S245_98V6.2 (Physcomitrella patens), 5'ss of exon 10
CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc--ttccgcttgtgccattg--tgcagacatcacgcgctaaatcaagttcaatcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgtctgcag
 || ||     | ||| | ||||||||||| |||||||||||||| ||  |||| | ||| || || ||||| || | ||| |||||||||||||| ||||||    | |  || |  |  |  |  ||  ||  |  ||||||     |  || || | |  | |   | |||   ||  |    ||| |   |    ||| |                                           
GTATGATGAACTCTCTTCGAAGGACAAGAGTGGCAAGGACTGGTCATTTGTTCTCAAGCAAATCGGAATGTTTTCATTCACTGGCTTGAACAAAGCACAGgtatattttcaatttctttaatttccatgagtgtgggtatcacgttactag-catgtccca--agctagcccacgtcctagggcataactt-tgtgcactcttc-------------------------------------------

upper sequence: GRMZM5G836910_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ26197 (Selaginella moellendorffii), 5'ss of exon 8
CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgcttccgcttgtgccattgtgcagacatcacgcgctaaatcaagttcaatcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgtctgcag
||||||     |     | ||||||||||| ||||| || ||||| |||||||| | ||| ||||| |||||||||| ||| ||| | | |||  | |||||||          |||   |   || |  | || |     | |   |  | |   ||| | | | |     ||                                                                     
CTACGAGGCACTCCTGTCAAAGGACAAGAGTGGCAAAGATTGGTCCTTCATTCTCAAGCAAATTGGGATGTTCTCCTTCACAGGCCTCACCAAGTCCCAGgtaaaa-------agctctcgaagttttcgaaacctggttggatc--ttcactgtgatcgctg-tgatgttttccag------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18169477|gb|BM339317.1|BM339317
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18162044|gb|BM331883.1|BM331883
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18164560|gb|BM334399.1|BM334399
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|26557366|gb|CA829601.1|CA829601
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|149000840|gb|EE038068.2|EE038068
EST:     TTTTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32925682|gb|CF030494.1|CF030494
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|78104307|gb|DV522725.1|DV522725
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18162138|gb|BM331977.1|BM331977
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|78114228|gb|DV532617.1|DV532617
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18171837|gb|BM341677.1|BM341677
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|76289790|gb|DV029358.1|DV029358
EST:     TTTTGAGGCAGATTGGCATGTTTTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|17930385|gb|BM267345.1|BM267345
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|60356876|gb|DN223849.1|DN223849
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|60349017|gb|DN215990.1|DN215990
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32925068|gb|CF029880.1|CF029880
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|60347013|gb|DN213986.1|DN213986
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|28986408|gb|CB351121.1|CB351121
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32926634|gb|CF031446.1|CF031446
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32924995|gb|CF029807.1|CF029807
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|13150003|gb|BG320325.1|BG320325
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32925736|gb|CF030548.1|CF030548
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|211493773|gb|FL172989.1|FL172989
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32925116|gb|CF029928.1|CF029928
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCGTATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|17929675|gb|BM266635.1|BM266635
EST:     TTATGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32926418|gb|CF031230.1|CF031230
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|6827402|gb|AW331045.1|AW331045
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32926642|gb|CF031454.1|CF031454
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|24934249|gb|CA452467.1|CA452467
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18162317|gb|BM332156.1|BM332156
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32926308|gb|CF031120.1|CF031120
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|13316097|gb|BG410544.1|BG410544
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18164367|gb|BM334206.1|BM334206
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|110971480|gb|EE191380.1|EE191380
EST:     TTTTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32863794|gb|CF003476.1|CF003476
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|5770276|gb|AI973450.1|AI973450
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18164383|gb|BM334222.1|BM334222
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18162972|gb|BM332811.1|BM332811
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|91056033|gb|EB166451.1|EB166451
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAANGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32926082|gb|CF030894.1|CF030894
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|32926242|gb|CF031054.1|CF031054
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCACAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|13515690|gb|BG517966.1|BG517966
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18167109|gb|BM336948.1|BM336948
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18173103|gb|BM348491.1|BM348491
EST:     TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
EST: gi|18176802|gb|BM351735.1|BM351735
EST:     TTGTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAG                         AGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG
genomic: TTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 113

CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGGATCTCGTTAGCTGGGCTGTCCCTGGCTAAGTGTGATTATCTTGCCGACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 770

CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGGATCTCGTTAGCTGGGCTGTCCCTGGCTAAGTGTGATTATCTTGCCGACG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 133

CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGGATCTCGTTAGCTGGGCTGTCCCTGGCTAAGTGTGATTATCTTGCCGACG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 510

CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgc ... tcgtctgcagAGTGACAACATGACGGATAAATGGCATATTTACATGACCAAGGATGGGCGGATCTCGTTAGCTGGGCTGTCCCTGGCTAAGTGTGATTATCTTGCCGACG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACGACAGTTTGTCTGCCAAGGACAAGAGCGGCAAGGACTGGTCTTTCATTCTGAGGCAGATTGGCATGTTCTCCTACACCGGCTTGAACAAAGCGCAGgtaacgctgcttccgcttgtgccattgtgcagacatcacgcgctaaatcaagttcaatcaccggtcacacactctttgttgaaacatacatatcatctacaaaaaaataacgtaaatgcataatttcgctttttcgtctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT