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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTGGAAAAGAGAATCCAAATGAAGATGGTCCTGAAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactcttccaatagaacagctgctgtctatgtttactgtgcttgtgtttggctttctatttgctcttaccttttttttgttagctttctttttattgtctaatttgtcttattttttttcag

Basic information

species Zea mays
transcript GRMZM5G835213_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835213_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 5'ss of exon 10
AATCTGGAAAAGAGAATCCAAATGAAGATGGTCCTGAAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactcttccaatagaacagctgctgtctatgtttactgtgcttgtgtttggctttctatttgctcttaccttttttttgttagctttctttttattgtctaatttgtcttattttttttcag
||  |||||| || ||| |||||||||||||||||||||| ||||| ||||  || |||||||||||||||||||||||||| || |||   |||| ||| |     | |   | ||| | | |  |||||| || ||| | | | | |     |        ||| ||      || | |||| |                          
AAGGTGGAAAGGATAATGCAAATGAAGATGGTCCTGAAAACAACCCACAGTACACGACTGTTTATGTTGGCAATCTTCCTCATGATgtaac-ctctcccatttctgaaacaaatttctttttgttttgtgct-gtattttgttgtttttccataccagtaacgtttctgcc--tcttatatttactag------------------------

upper sequence: GRMZM5G835213_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
AATCTGGAAAAGAGAATCCAAATGAAGATGGTCCTGAAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactcttccaatagaacagctgctgtctatgtttactgtgcttgtgtttggctttctatttgctcttaccttttttttgttagctttctttttatt-gtctaatttgtcttattttttttcag
||  ||| |||||||   ||| | | || | |||||| || |||||||||| ||| ||||||||||| ||||||||| |||  ||||||  |  |         || |  | |  | | |  ||  | |  |||| | ||   ||   ||||  | |  | ||   |||| |   | |||||| ||  |||  | ||                
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaacaattcgccaaaaattttccctttttactttatttatttgtttatg--ctttggtttgg-catctcattaacttgtgaaaatcctttttgttcatctgctatgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361403|gb|CD445760.1|CD445760
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|24934275|gb|CA452493.1|CA452493
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149098620|gb|EE184625.2|EE184625
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|71436375|gb|DR817425.1|DR817425
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|26456718|gb|CA828301.1|CA828301
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149096874|gb|EE182668.2|EE182668
EST:     AAAATAACCTTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATG
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATG
EST: gi|22546594|gb|BU098905.1|BU098905
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|71428352|gb|DR809402.1|DR809402
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTT
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTT
EST: gi|148965511|gb|EE016330.2|EE016330
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCAC
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCAC
EST: gi|71760191|gb|DR958128.1|DR958128
EST:     AAATAACCCTCAGTTTACTACTGTTTATGTTTGGCA-TCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTG
genomic: AAATAACCCTCAGTTTACTACTGTTTATGTT-GGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTG
EST: gi|93012834|gb|EB638354.1|EB638354
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149098619|gb|EE184624.2|EE184624
EST:     AAATAACCCTCAGTTTACTACTGTTTATGTTGGGCA-TCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAATAACCCTCAGTTTACTACTGTTTATGTTGG-CAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|22545671|gb|BU098030.1|BU098030
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGG
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGG
EST: gi|33091883|gb|CF051877.1|CF051877
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|94475248|gb|EB704206.1|EB704206
EST:     AAATAACCCTCAGTTTACTACTGTTTATGTTCGGCA-TCTTCCTCACGAA                         GCTACCATGAATGATGTGCACCTGTTTT
genomic: AAATAACCCTCAGTTTACTACTGTTTATGTT-GGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTT
EST: gi|71324258|gb|DR798829.1|DR798829
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149111090|gb|EE294586.2|EE294586
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCA-TCTTTCTCACGAG                         GCTACCATGAA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAA
EST: gi|31362301|gb|CD446658.1|CD446658
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|211492468|gb|FL234470.1|FL234470
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|211492467|gb|FL234469.1|FL234469
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149103764|gb|EE289171.2|EE289171
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGCCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCCCCCTGTTTTCCCATTTACTGGGGGGCTGGTT
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACC-TGTTTTTCCATTCACTGGGGG-CTGGTT
EST: gi|31361559|gb|CD445916.1|CD445916
EST:     TTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: TTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|194717059|gb|FK934212.1|FK934212
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|71773943|gb|DR971831.1|DR971831
EST:     AAATAACCCTCAGTTTACTACTGTTTGATGT-GGCAATCTTTCTCACGAC                         GCTACCATGAATGATGTGCACCTGTTTTTCCAT-CACTGGGGGCTGGGTCA
genomic: AAATAACCCTCAGTTTACTACTGTTT-ATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149079527|gb|EE168509.2|EE168509
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAA
EST: gi|149104834|gb|EE290298.2|EE290298
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|149004891|gb|EE039402.2|EE039402
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTTCCATT
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTT-CCATT
EST: gi|26456698|gb|CA828281.1|CA828281
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|32850339|gb|CD990020.1|CD990020
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|71439176|gb|DR820226.1|DR820226
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCAGTTCACTGGGGGCTGGTTC
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCA-TTCACTGGGGGCTGGTTC
EST: gi|32866442|gb|CF006124.1|CF006124
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
EST: gi|71431559|gb|DR812609.1|DR812609
EST:     AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAG                         GCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA
genomic: AAAATAACCCTCAGTTTACTACTGTTTATGTTGGCAATCTTCCTCACGAGgtattactct ... tttttttcagGCTACCATGAATGATGTGCACCTGTTTTTCCATTCACTGGGGGCTGGTTCA