1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GATCAAGATTTGGAGATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAGgtaccatcttatttgctccattctgaatgctttctttctttggtgtaatcaaggattgttctgtgaagttgcaacgtggtttggctgcag
species | Zea mays |
transcript | GRMZM5G833124_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAG GATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCTEST: gi|60356183|gb|DN223156.1|DN223156
genomic: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAGgtaccatctt ... ttggctgcagGATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCT
EST: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAG GATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCTEST: gi|84977310|gb|DW475732.1|DW475732
genomic: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAGgtaccatctt ... ttggctgcagGATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCT
EST: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAG GATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCTEST: gi|32849185|gb|CD988866.1|CD988866
genomic: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAGgtaccatctt ... ttggctgcagGATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCT
EST: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAG GATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCTEST: gi|93281684|gb|EB673948.1|EB673948
genomic: ATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAGgtaccatctt ... ttggctgcagGATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCT
EST: AAACCTTTTTTCGGG GATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCT
genomic: AAACCTTTGTTCGAGgtaccatctt ... ttggctgcagGATGAGAGGTATATTGTTACATATAACCCAACAAAGGACAAGGTATATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCAAGATTTGGAGATGCGTTTCAAGAACCTGCTTCGTTTCTTGCTATAAAACCTTTGTTCGAGgtaccatcttatttgctccattctgaatgctttctttctttggtgtaatcaaggattgttctgtgaagttgcaacgtggtttggctgcag
- - - - - - - - - - - - AAGAAC