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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCCTCTGGTTTGCAAGATACTGCTCACATTCTTGAAGATGGGAAAAGCATATACAATGCAACCTTAAACATGTCTGACCTGGCACTAGGTGTGAACAGgttagtaattttcttcaaacatgtctggtactctggtagtctttgcataatttaccttttggagggacttggaacttggaagccatcctatcttttttca...

Basic information

species Zea mays
transcript GRMZM5G831712_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G831712_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g23110.1 (Oryza sativa), 5'ss of exon 10
AGTCCTCTGGTTTGCAAGATACTGCTCACATTCTTGAAGATGGGAAAAGCATATACAATGCAACCTTAAACATGTCTGACCTGGCACTAGGTGTGAACAGgttagtaattttcttcaaacatgtctggtactctggtagtctttgcataatttaccttttggagggacttggaacttggaagccatcctatcttttttca--------
|||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||| ||||| | ||||||||||||||| ||| |||||||||||||  || | ||| ||   | ||| ||| ||    |   ||  ||||||       | ||| |||| || |   ||     |   |||   |    | |  |        
AGTCCTCTGGTTTGCAAGATACAGGTCATATTCTTGAAGATGGAAAAAGCATATACAATACAACCCTGAACATGTCTGACCTGACACGAGGTGTGAACAGgcaaggattttgctcacagcatttcttgtcaaatt-caggatttgca-------cttttaggagtgattgtcaaggcatatttcatatgagtgatatggataaaccga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31349421|gb|CD433778.1|CD433778
EST:     ATTTACAATGCAACCTTAAACATGTCTGACCTGGCACTAGGTGTGAACAG                         CTACTATGTACTCCAGATCATTGAACAGGATGATGGTTCTGAGTGCTACGT
genomic: ATATACAATGCAACCTTAAACATGTCTGACCTGGCACTAGGTGTGAACAGgttagtaatt ... ttttgtgaagCTACTATGTACTCCAGATCATTGAACAGGATGATGGGTCTGAGTGCTACGT
EST: gi|60344927|gb|DN211900.1|DN211900
EST:     ATATACAATGCAACCTTAAACATGTCTGACCTGGCACTAGGTGTGAACAG                         CTACTATGTACTCCAGATCATTGAACAGGATGATGGGTCTGAGTGCTACGT
genomic: ATATACAATGCAACCTTAAACATGTCTGACCTGGCACTAGGTGTGAACAGgttagtaatt ... ttttgtgaagCTACTATGTACTCCAGATCATTGAACAGGATGATGGGTCTGAGTGCTACGT