1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATACACAGAAGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcgcatccctgttgtacttgcttagtttagaaatatcctaaatagttaataattggttccggatcttggacttgcag
species | Zea mays |
transcript | GRMZM5G824831_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|211269953|gb|FL444406.1|FL444406
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|6952542|gb|AW424610.1|AW424610
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACCGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGCAATTATTCGAGCEST: gi|148973074|gb|EE024136.2|EE024136
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|78112696|gb|DV531090.1|DV531090
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCCCCCTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|149076954|gb|EE165611.2|EE165611
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAAAAGG ATATGAGGGGCAAATTTCCTCCA-CAACATTGAAAEST: gi|5268558|gb|AI770522.1|AI770522
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAA
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCATATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|211149323|gb|FL312581.1|FL312581
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|32830197|gb|CD969875.1|CD969875
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|211252215|gb|FK953396.1|FK953396
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: TGGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTTCCTCCA-CAACAT-GAAAEST: gi|6194486|gb|AW146590.1|AW146590
genomic: TGG-AGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTT-CCTCCAACAACATTGAAA
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|67024880|gb|CO453629.1|CO453629
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGTCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|32795340|gb|CD947576.1|CD947576
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGGTGATGCCATCCACACTGCAATTTTGACTTTGATAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGCEST: gi|211321302|gb|FL273340.1|FL273340
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
EST: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGG ATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
genomic: ATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcg ... ggacttgcagATATGAGGGGCAAATTTCCTCCAACAACATTGAAATCGGAATTATTCGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACACAGAAGATATGGAGCTTGATGATGCCATCCACACTGCAATTTTGACTTTGAAAGAAGGgtatcgctcgcatccctgttgtacttgcttagtttagaaatatcctaaatagttaataattggttccggatcttggacttgcag
- - - - - - - GGAGCT
- - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG