Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaattttattaacttctttcgttttcaaacacgcaatagaatttctataccatttcattaaaggagagttacaatcccaacgccgctcgttcaaacta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g34750.2 (Oryza sativa), 5'ss of exon 8
--AGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgta-aattttattaacttctttcgttttcaaacacgcaata-gaatttctataccatttcattaaaggagagttacaatcccaacgccgctcgttcaaacta
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AGAGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAGgtgtgaacttatta--cttttccaacctgcagtatatattttgagcaaagtcgtcttcttttctactggtgcctgaaattttgaatagataattgcggagtg
upper sequence: GRMZM5G820727_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os08g34750.1 (Oryza sativa), 5'ss of exon 9
AGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgta-aattttattaacttctttcgttttcaaacacgcaata-gaatttctataccatttcattaaaggagagttacaatcccaacgccgctcgttcaaacta
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AGGAGATGATTAGAGGCCTTACACAAGTACCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGTAGTCAAAGATTGGTTGCGCATAACACCATCCAGgtgtgaacttatta--cttttccaacctgcagtatatattttgagcaaagtcgtcttcttttctactggtgcctgaaattttgaatagataattgcggagtgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71762488|gb|DR960425.1|DR960425EST: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAG AATAATCGACTATTCGGCCAATGTCAGGTGAAAAGCTATTGGCTAAACTCG
genomic: TGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaatttta ... ttctcatcagAATAATCGACTATTCGGCCAATGTCAGGTGAAAAGCTATTGGCTAAACTCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGATGATAAGAGGCCTTACGCAAGTTCCGTGGGAACGTGTTGATGTGAGCTTCCAGAAAAGCACCCAAAGATTAGTTGCGCATAACACAATTCAGgtaaattttattaacttctttcgttttcaaacacgcaatagaatttctataccatttcattaaaggagagttacaatcccaacgccgctcgttcaaacta
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT