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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACTAGGATTTGTTCCTGAGGGAACAGATTTACTTGCAGTTGCAGATGCGTTGCGGTTTTCCTTTGGTGATGTCAGGAGGCAATCAAATGATTTCCAGgttagttaatatttttctttccagtgcatgtgcaaagtgaaatcagaagacatgaaaatattataggccttaggagaggcggtgtccgccaaacttgaca...

Basic information

species Zea mays
transcript GRMZM5G817551_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G817551_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g27480.1 (Oryza sativa), 5'ss of exon 10
TTCACTAGGATTTGTTCCTGAGGGAACAGATTTACTTGCAGTTGCAGATGCGTTGCGGTTTTCCTTTGGTGATGTCAGGAGGCAATCAAATGATTTCCAGgttagttaatatttttctttccagtgcatgtgcaaagtgaaatcagaagacatgaaaatattataggccttaggagaggcggtgtccgccaaacttgaca--
|||||| || ||||| ||||||||||||||  ||| ||  ||||| ||||| || ||  |||||||||||||||  |||||||||||||||||||| |||||| |||||||||||| ||    ||  ||||        |      |    ||    || | ||   |||  | | | ||  ||          |  |    
TTCACTTGGGTTTGTCCCTGAGGGAACAGACCTACATGGGGTTGCTGATGCATTACGTGTTTCCTTTGGTGATGGAAGGAGGCAATCAAATGATTTTCAGgtttgttaatattttttttg--ggtatatgtagtggactagcctttactggatttccatctgattcacctctgaaaatgcaatgcattttttcttaaatcat