1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTAGTGTGGAGAGAAAATCTGCTCAGGCACTGCAAGAGGAGTGCCGCCAAATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatactgcatttcatggttctccataggactctgtgtttcgtagttgcgccctgaactgaaacagattttgactcgtgttccag
species | Zea mays |
transcript | GRMZM5G807767_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAEST: gi|108953379|gb|EC364711.1|EC364711
genomic: ATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
EST: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAEST: gi|13557816|gb|BG549172.1|BG549172
genomic: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
EST: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAAEST: gi|32929396|gb|CF034208.1|CF034208
genomic: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
EST: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAG ATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
genomic: AATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatact ... cgtgttccagATTCCGATGCGCATATCAGCAAAACCCGAGAAATTGCGATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAGTGTGGAGAGAAAATCTGCTCAGGCACTGCAAGAGGAGTGCCGCCAAATGTTGGATTCATTCCCAACTACCATCGAACAAGACCAGCAGATCCTAGgtaacatactgcatttcatggttctccataggactctgtgtttcgtagttgcgccctgaactgaaacagattttgactcgtgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT