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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggacatatgcag

Basic information

species Zea mays
transcript GRMZM2G591258_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA14G06340.2 (Glycine max), 5'ss of exon 19
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgt-tcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggacatatgcag
 || ||||| ||||| ||| |||||| ||| ||||| || ||||||||||||||| | || ||||  ||||| ||||| || || |||||  ||||||||||||    || ||||| | || |    | |    ||   ||  || | ||||      |   | |    | |  ||||                                 
CGTAGAGTTTTTTGGTACACTGTCAAAAGAATGGGCATTAGAATGCATGAAAGACTTACTGCTGGCCAATCTTAGGGGCAACCTACAGATCATTGTGCAGgtatggtggtgtcagtgttttctataacttggaact---tattaaacaattgttgacaaagctttcttatgtgtgttcag-------------------------------

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 19
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttcttagttctaattattgtgaaatcttgggggacatatgcag
||||||||||||||| ||  | |||||||| |||||| | || || ||||||||||||||||| || |||||  | |  |||||||||||  |||||||||||     ||   ||||  |||      |       | | |||   ||||   |   | ||    |   || |||  |     ||||| |                    
TGTTGAGTTCTTTGGAACTCTTTCAAGAGAATGGGCTCTTGAGTGTATGAAAGACCTTCTACTTGTCAATCTTCGTGCCAATCTTCAGATAATTGTGCAGgtaaaatagt---gttttgtatatgtgattattgattattcca---cattcataaaaaattgtggctcactaagtcat-----ttgtgcag-------------------

upper sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 19
TGTTGAGTTCTTTGGCACATTGTCAAGAGAGTGGGCTTTGGAATGCATGAAAGACCTTCTACTGGTTAATCTGAGGGGAAATCTTCAGATTGTTGTGCAGgtattcctgttcagtttcttatgccccctccccctctgtaccaacccattggcatttattttcttccttc-ttagttctaattattgtgaaatcttgggggacatatgcag
||| ||||||||||| ||  | ||| |||| ||||||||||| |||||||| |||||||| ||||| ||||| || || || ||||||||  |||| ||||||  | |  |    |||| |||     |||        | | ||   |   |  ||||||  | | |||  || |  |  |   ||                        
TGTAGAGTTCTTTGGTACGCTTTCACGAGAATGGGCTTTGGAGTGCATGAAGGACCTTCTTCTGGTCAATCTAAGAGGCAACCTTCAGATAATTGTTCAGgtacccatcattgtcttctgatggatgatcc------agatcgacttgtaaac--ttatttcttgctttcgctaatattggtctgtgcag---------------------