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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAATGCATCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctataaaacacaaaatttgtttttagcattgttttcaggaatgacgtctgtcttcgattgaattgacattcttgttctgagattataaaattaag...

Basic information

species Zea mays
transcript GRMZM2G550865_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G550865_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 25
ATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAATGCATCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctataaaacacaaaatttgtttttagcattgttttcaggaatgacgtctgtcttcgattgaattgacattcttg-ttctgagattataaaattaag--
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || |  |||||||||||||||| ||||    ||    |     |  ||    || |   ||     || |  | |||| |||||  | ||||| |||||| |  ||    |   |  
ATGCAAGCTTTCTGGATGCCACTGTTTGCATATTTAATGCATCGAGTTTGAGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctacaaaaactcaa--caggacacaatatatcctttatatattctaact-tactggattaaattggtactcttgcttctgaaaacattttgtcttgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113690337|gb|DW848599.1|DW848599
EST:     TCGGATTCTTCCAGCTTCGTATCT-CCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTAGTGGTTGCGGCACACCCTTCGGAAGCGAGTC
genomic: TCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTT-GTGGTTGCGGCACACCCTTCGGAAGCGAGTC
EST: gi|113836935|gb|DW958839.1|DW958839
EST:     TCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGNNAGT
genomic: TCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCG--AGT
EST: gi|8665781|gb|BE186597.1|BE186597
EST:     TCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: TCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|78083754|gb|DV512147.1|DV512147
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|7304567|gb|AW600506.1|AW600506
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|4388094|gb|AI491266.1|AI491266
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|211400405|gb|FL382672.1|FL382672
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|116819483|gb|EC862618.1|EC862618
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|87152457|gb|DY397246.1|DY397246
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
EST: gi|6964703|gb|AW433396.1|AW433396
EST:     CTTCCAGCTTCGTATCTCCCCCCAAATATCAG                         TCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA
genomic: CTTCCAGCTTCGTATCTCCCCCCAAATATCAGgtattctata ... tctcttgtagTCCGAGTGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCGAGTCA