Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtgataatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag

Basic information

species Zea mays
transcript GRMZM2G477146_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtga-taatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag
 |||||  | |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| |||| |||||||| | || |    |||  | | ||||| ||  || | |||| ||||||  | | || ||  || |     | ||
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgc-tcatgataaactaagggttttggattgccttcattag

upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtgataatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag-----------------
 |||||||| ||||||||||| || |||||||| |||||||| || || ||||| || ||||| || |||||||||||| | || |||||||||||||| |||  ||||| |||    | ||   | |   | ||      ||| |||| |    |      || ||||   |  |  |  ||                     
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgtac-ttcctctttaacttgat---acacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca

upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 11
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtgataatcggataa-tgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag------------
 |||||||| ||||||||||| || |||||||| |||||||| ||  | ||||| |||||||| || |||||||||||| | || |||||||||||||| |||  |||    |      |   | | |  |    |      |||||   | |  ||  ||    | ||  | |  |  ||  |  |             
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAACATGGACTTTCTTCTCAATCTGTACAGGATTTATCTATTTTCAAGAATATCAGgtactttctctctcacttaatatgcacaggtagcctttgctttgcatgggcactctaagaagatttaatcatataatattgaagaaaactaattaaatac

upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 10
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttc-ctgtttgtgataatcggataatgaagtgaatcatgcatttcc---tcattataaacc--gatgattctgtttttc-tgctgtcag--------------------------------------------------------
  ||||  ||| ||||||||| || || |||||||||||||| ||||||||||| |||||||| || ||||||||||   ||||||||||||| | ||| ||   |    ||  |    |     | |  |    |   |  |  || | |     | ||   | |  |||||||   ||  || |  |||||                                                         
ATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGgttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacag

upper sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 10
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttc-------ctgtttgtgataatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag------
| ||||||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||    ||       || | | |     |   | ||   ||||| | |    ||  || |    ||   |       | |  || |||||          
GTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGTATACTTTCAGGAATATCAGgtgctctctctctctctctctctctctcttatagaacctagtgactgaaaatttaacttaggtcaatttggctccattttacttgtgctgctcactggga