Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGGTGGCTTTTGAAGAACAAAGTAGAGCTGTCCCTTTTGTCTGGTCTAGCTAACTTATGCATCTTTCTTATTGGgtactcttggtttttctccagaatatcaaagctatagcaatttgatatatacctgtttcttgcattgtaactttgttgtctacatgctataccatgtggcatgtggtactcag

Basic information

species Zea mays
transcript GRMZM2G473533_T06
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G473533_T06 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os09g39220.1 (Oryza sativa), 5'ss of exon 10
GGGTGGTGGCTTTTGAAGAACAAAGTAGAGCTGTCCCTTTTGTCTGGTCTAGCTAACTTATGCATCTTTCTTATTGGgtactcttggtttttctccagaatatcaaagctatagcaatttgatatata-cctgtttcttgcattgtaactttgttgtctacatgctataccatgtggcatgtggtactcag
|| |||||||||||||  |||||||| ||||||||||||||| ||| | ||| |||||  | ||| ||  |||||||||||||||  | | |  ||||||  |      |      || | ||||||  ||||||| ||||||| |||  |  ||  | |     ||| ||||  |||     |       
GGATGGTGGCTTTTGAGAAACAAAGTGGAGCTGTCCCTTTTGGCTGCTGTAGTTAACTGCTTCATTTTCGTTATTGGgtactcttcctatgttaccagaacct---gctttcgattatataatatatggcctgtttattgcattctaatctctttaacaatggtttattccattgggcccacag-------

upper sequence: GRMZM2G473533_T06 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g25189.6 (Oryza sativa), 5'ss of exon 13
GGGTGGTGGCTTTTGAAGAACAAAGTAGAGCTGTCCCTTTTGTCTGGTCTAGCTAACTTATGCATCTTTCTTATTGGgtactcttggtttttctccagaatatcaaagctatagcaatttgatatata-cctgtttcttgcattgtaactttgttgtctacatgctataccatgtggcatgtggtactcag
|| |||||||||||||  ||||| || ||||||||||||||| ||| |  || |||||  | ||| ||| |||||||||||||||  | | |  ||||||  |      | |    || ||||||||  ||||||| ||||||| |||  |     | || |   | |    | |  |||           
GGATGGTGGCTTTTGAGAAACAATGTGGAGCTGTCCCTTTTGGCTGCTACAGTTAACTGCTTCATTTTTGTTATTGGgtactcttcctatgttaccagaacctgttg--tttgattatatgatatatggcctgtttattgcattctaatctc----tttaaaaaatgttttttttcccatccacag-----