Sequence
atgc intronic sequence ATGC exonic sequenceATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaatattccccatctagtcaatacactaattaactgtatgactcctgatagacttaatattggttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 5'ss of exon 10
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaata-------ttccccatctagtcaat-acactaattaactgt---atgactcctgatagacttaa------tattggttacag
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ATGTGTGGATCATCGGCCCTTCCTTCCCCACTTATGAAACGGTGGGAGGAAGTGACAGGTCACCGTCTTTTGGAACGATACGGCATGACTGAGgttaaaaacacgaactcttccttttctatggacttacatttcataaatatgatatcattttttcatgttttgacagtcttattggttgtag
upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT3G16170.1 (Arabidopsis thaliana), 5'ss of exon 9
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaatattccccatctagtcaa--tacactaattaactgtatgactcctgatagacttaatattggttacag--------------------------------------------
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ATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGCATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGgtaagtagattttcctgtctctttgagttaccataatcaataccttagaacaagcttaacacaagcttgttcttagtagttacatctactgaattaaaaaaaaatcttcaatattcccag
upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 10
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaatattccccatctagtcaatacactaattaactgtatgactcctgatagacttaatattggttacag---------------------------------------------------
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ATGTGTGGCTCCTCTGCGCTTCCCTATCCTGTCATGCAACAATGGGAAACTATCACAGGACATCGTCTTTTGGAGCGATATGGAATGACTGAGgtaagtgat-----tcattagttgaattcatt--tttgccggatatttattcatggagaaacggttagtctgatttctttagagatattcttcttctggttatactaatggtttgatgtttgtag
upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ19769 (Selaginella moellendorffii), 5'ss of exon 9
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaatattccccatctagtcaatacactaattaactgtatgactcctgatagacttaatattggttacag
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ATGTGTGGATCTTCTGCTCTTCCGCTGCCAGTCTTTATACATTGGGAGAAAGTAACAGGCCATCGGCTTTTGGAACGTTACGGAATGACTGAGgtacgcaatgg---ctatggaatttgtcctttgat-aatcaaat-----ttgagtgatgcag------------
upper sequence: GRMZM2G460078_T01 (Zea mays), 5'ss of exon 10
lower sequence: EFJ08604 (Selaginella moellendorffii), 5'ss of exon 8
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaata-ttccccatctagtcaatacactaattaactgtatgactcctgatagacttaatattggttacag
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ATGTGTGGATCTTCCGCTCTTCCGCTGCCAGTCTTTATACATTGGGAGAAAGTAACAGGCCATCGGCTTTTGGAACGTTACGGAATGACTGAGgtacgcaatggctatggaatttgtcc-ttcgataatcaa--atttgagtgatg-cag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14529467|gb|BI096600.1|BI096600EST: GGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAG TTTGTCATGGCACTGTCTAATCCATTGCATGGTATCCGAAAAGA
genomic: GGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaata ... ttggttacagTTTGTCATGGCACTGTCTAATCCATTGCATGGTATCCGAAAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTGTGGATCATCAGCTCTTCCTTCCCCACTTATGAAGAGGTGGGAGGAAGTGACAGGCCATCGTCTTTTGGAACGCTATGGTATGACTGAGgtaaaaaatattccccatctagtcaatacactaattaactgtatgactcctgatagacttaatattggttacag
- - - - - - - - - - - - - - - - - - - - - - GGAGGA