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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccactattcgtaatctgcattttctctaggttgtgtatcctcacagtacattggaagttagtcgtaaaaatgtgtgctttgtcataacataacgcatacgacatactgctgcag

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 5'ss of exon 10
CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccactattcgtaatctgcat-tttctctaggttgtgtatcctcacagtacattggaagttagtcgtaaaaatgtgtgctttgtcataacataacgcatacgacatactgct-gcag-------------------------------------------------------
|||||    ||||| ||||| ||||||||| |||||||||| ||||| |||||||| |  |||||||||||||  |  || || | | | ||  |||   | |   |||| | | || |    ||   ||   |  || || |   | |   |   |  ||| | | |  |    ||||    | ||  | |                                                        
CGTGCCTTTCATGTGTACTCGGAAGCAAGGCGGGTTTATGCCTTCAGAGATACTGTATTGTCAAAACTCAGgtacgttcattaattgcagtcaccatgcatattctggttattt-tcttgtttgtttcttcccaactattc-tcttactacatttatcctcacagc-tgtcatggacgattagcagcccgtatacgaacatttatttctaaattgagagatctaactgttgctatcttttttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337770|gb|CO532896.1|CO532896
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|60349907|gb|DN216880.1|DN216880
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|60398990|gb|DN231806.1|DN231806
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|67018909|gb|CO447658.1|CO447658
EST:     TAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|149071532|gb|EE159923.2|EE159923
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|76011230|gb|DT938400.1|DT938400
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|93014043|gb|EB639563.1|EB639563
EST:     AAGGAGGGTTTATGCTTTCAGGGATACGGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATT
genomic: AAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAA-GCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATT
EST: gi|78111011|gb|DV529408.1|DV529408
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|60338971|gb|DN205944.1|DN205944
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|110524608|gb|EE028792.1|EE028792
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|148951726|gb|EC897479.2|EC897479
EST:     CTTTCAGGGATACTGTTTCTTCAAAACTCAG                         TGAGGAAGGCAAGGTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: CTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71434413|gb|DR815463.1|DR815463
EST:     GCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATT
genomic: GCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagT-GAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATT
EST: gi|32944106|gb|CF048925.1|CF048925
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|116826426|gb|EC870214.1|EC870214
EST:     AGGG-TTATGCTTTCAGGGATACTGTCTCTTC-AAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: AGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|88746509|gb|DY530650.1|DY530650
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|60345732|gb|DN212705.1|DN212705
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|32833835|gb|CD973513.1|CD973513
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|87152649|gb|DY397438.1|DY397438
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|37386348|gb|CF630360.1|CF630360
EST:     GAAGCAAGGAGAGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|148960155|gb|EE153405.2|EE153405
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|17921536|gb|BM259187.1|BM259187
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGGGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|17969988|gb|BM276757.1|BM276757
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|78025070|gb|DV493457.1|DV493457
EST:     TTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: TTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|211541591|gb|FL022794.1|FL022794
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAR                         TGAGGAAGGCAAGCTTAARAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71434164|gb|DR815214.1|DR815214
EST:     AAGCAAGGAGGGTTTATGCTTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: AAGCAAGGAGGGTTTATGC-TTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|17921866|gb|BM259517.1|BM259517
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGNGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|67016317|gb|CO445066.1|CO445066
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|76912625|gb|DV164824.1|DV164824
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71762160|gb|DR960097.1|DR960097
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|32943061|gb|CF047880.1|CF047880
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|211541592|gb|FL022795.1|FL022795
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71318358|gb|DR795941.1|DR795941
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|32835728|gb|CD975406.1|CD975406
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71434414|gb|DR815464.1|DR815464
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71447465|gb|DR828515.1|DR828515
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|211135219|gb|FL444577.1|FL444577
EST:     GATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|74231837|gb|DT639751.1|DT639751
EST:     GAAGCAAGGAGGGTTTATGTTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|50337771|gb|CO532897.1|CO532897
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|71773515|gb|DR971415.1|DR971415
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|78085243|gb|DV513636.1|DV513636
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: gi|50330092|gb|CO525218.1|CO525218
EST:     GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG                         TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccactattcgtaatctgcattttctctaggttgtgtatcctcacagtacattggaagttagtcgtaaaaatgtgtgctttgtcataacataacgcatacgacatactgctgcag

- - - - - - - - - - - AAGCAA
- - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - AAGGAG