1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccactattcgtaatctgcattttctctaggttgtgtatcctcacagtacattggaagttagtcgtaaaaatgtgtgctttgtcataacataacgcatacgacatactgctgcag
species | Zea mays |
transcript | GRMZM2G458549_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTAEST: gi|60349907|gb|DN216880.1|DN216880
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|60398990|gb|DN231806.1|DN231806
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|67018909|gb|CO447658.1|CO447658
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: TAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|149071532|gb|EE159923.2|EE159923
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTAEST: gi|76011230|gb|DT938400.1|DT938400
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|93014043|gb|EB639563.1|EB639563
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: AAGGAGGGTTTATGCTTTCAGGGATACGGTCTCTTCAAAACTCAG TGAGGAAGGCAAGGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTEST: gi|78111011|gb|DV529408.1|DV529408
genomic: AAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAA-GCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATT
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|60338971|gb|DN205944.1|DN205944
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|110524608|gb|EE028792.1|EE028792
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTAEST: gi|148951726|gb|EC897479.2|EC897479
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: CTTTCAGGGATACTGTTTCTTCAAAACTCAG TGAGGAAGGCAAGGTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|71434413|gb|DR815463.1|DR815463
genomic: CTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTEST: gi|32944106|gb|CF048925.1|CF048925
genomic: GCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagT-GAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATT
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|116826426|gb|EC870214.1|EC870214
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: AGGG-TTATGCTTTCAGGGATACTGTCTCTTC-AAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|88746509|gb|DY530650.1|DY530650
genomic: AGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|60345732|gb|DN212705.1|DN212705
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|32833835|gb|CD973513.1|CD973513
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|87152649|gb|DY397438.1|DY397438
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|37386348|gb|CF630360.1|CF630360
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGAGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|148960155|gb|EE153405.2|EE153405
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|17921536|gb|BM259187.1|BM259187
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGGGATCTTATGAACGAGAGCCATTAEST: gi|17969988|gb|BM276757.1|BM276757
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|78025070|gb|DV493457.1|DV493457
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: TTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|211541591|gb|FL022794.1|FL022794
genomic: TTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAR TGAGGAAGGCAAGCTTAARAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|71434164|gb|DR815214.1|DR815214
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: AAGCAAGGAGGGTTTATGCTTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|17921866|gb|BM259517.1|BM259517
genomic: AAGCAAGGAGGGTTTATGC-TTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGNGATCTTATGAACGAGAGCCATTAEST: gi|67016317|gb|CO445066.1|CO445066
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|76912625|gb|DV164824.1|DV164824
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTAEST: gi|71762160|gb|DR960097.1|DR960097
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|32943061|gb|CF047880.1|CF047880
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|211541592|gb|FL022795.1|FL022795
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|71318358|gb|DR795941.1|DR795941
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|32835728|gb|CD975406.1|CD975406
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|71434414|gb|DR815464.1|DR815464
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|71447465|gb|DR828515.1|DR828515
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|211135219|gb|FL444577.1|FL444577
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|74231837|gb|DT639751.1|DT639751
genomic: GATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGTTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTAEST: gi|50337771|gb|CO532897.1|CO532897
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|71773515|gb|DR971415.1|DR971415
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATTTTATGAACGAGAGCCATTAEST: gi|78085243|gb|DV513636.1|DV513636
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTAEST: gi|50330092|gb|CO525218.1|CO525218
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
EST: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAG TGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
genomic: GAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccac ... actgctgcagTGAGGAAGGCAAGCTTAAGAAACTTGGTGATCTTATGAACGAGAGCCATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGCGACCCATGTCTACTCTGAAGCAAGGAGGGTTTATGCTTTCAGGGATACTGTCTCTTCAAAACTCAGgtgggcccactattcgtaatctgcattttctctaggttgtgtatcctcacagtacattggaagttagtcgtaaaaatgtgtgctttgtcataacataacgcatacgacatactgctgcag
- - - - - - - - - - - AAGCAA
- - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - AAGGAG