1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATAATAGCCGCCTATACCAAAATTTGATTGCTGGGATCGCCATCTCAGTGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAGgtaaccatcagaaacttacaatgtttgcggttatctctctgtgattcatgtaacccaggtatagcttattgcatctgcag
species | Zea mays |
transcript | GRMZM2G458538_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAG GGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGATEST: gi|86465843|gb|DY232216.1|DY232216
genomic: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAGgtaaccatca ... gcatctgcagGGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGAT
EST: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAG GGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGATEST: gi|5713903|gb|AI943888.1|AI943888
genomic: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAGgtaaccatca ... gcatctgcagGGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGAT
EST: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAG GGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGATEST: gi|33094918|gb|CF054912.1|CF054912
genomic: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAGgtaaccatca ... gcatctgcagGGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGAT
EST: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAG GGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGATEST: gi|76018772|gb|DT945942.1|DT945942
genomic: TGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAGgtaaccatca ... gcatctgcagGGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGAT
EST: TCTTCTGAAGATTCCTGGTGTATAG GGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGAT
genomic: TCTTCTGAAGATTCCTGGTGTATAGgtaaccatca ... gcatctgcagGGATGAAGATCTTGATAGAAGGTTTCTTGTAAAATGTTTGCTTGATAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATAATAGCCGCCTATACCAAAATTTGATTGCTGGGATCGCCATCTCAGTGTGCTTGTATCTCTGCTCGCTTATTCTTCTGAAGATTCCTGGTGTATAGgtaaccatcagaaacttacaatgtttgcggttatctctctgtgattcatgtaacccaggtatagcttattgcatctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA