Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacggaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttag

Basic information

species Zea mays
transcript GRMZM2G456000_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaac---ggaacctctcttgagagtttaggggatgtcaaaccc--actgatc----tgagtctt---gtctgcttgtgttgttag-----------
 || ||||| ||||||||||| |||||||  ||||| ||||| |||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||||||||| ||| |   | | |  ||   |||| |||    | ||| ||      | ||||     |||         |  |||||  ||||  |           
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgcagctacttgcgagaattttattg-tgttaagttttaagtgattatgatgaactactaaattagcttgctttgtatgactatttagac

upper sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 10
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacggaacctctcttgagagtttagggg---atgtcaaacccactgatctgagtcttgtctgcttgtgttgttag------------------------------------
|||||| ||||| || || || |||||| |||| || ||     | |||||||||||| | || ||||||||| |||| |||||||| ||||| || ||||||       ||   |    | | | | ||   |   | ||   |     | || ||||||    ||  || |||||  |                                     
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtccc--ctatttttgttgccatatatataaggtgaagacacctactttccaattgcag

upper sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA17G01400.1 (Glycine max), 5'ss of exon 9
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgta----cggaacg---gaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttag------------------------------------
|||||| ||||| || || || |||||| |||| || ||     | |||||||||||| | || ||||||||| |||| |||||||| ||||| || ||||||    |   | |   |||      |    |  | |  |||||    |     | || ||||||    ||  || |||||  |                                     
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattattcatgtcaaaggatg----attgtattatttgagtccc--ctatttttgttgccatatatataagttgaagacacctactttccaattgcag