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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacggaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttag

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g51630.1 (Oryza sativa), 5'ss of exon 10
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaac---ggaacctctcttgagagtttaggggatgtcaaaccc--actgatc----tgagtctt---gtctgcttgtgttgttag-----------
 || ||||| ||||||||||| |||||||  ||||| ||||| |||||||||||||||||||| ||||| ||| | ||||||||||||| ||||||||||||| ||| |   | | |  ||   |||| |||    | ||| ||      | ||||     |||         |  |||||  ||||  |           
ATATTTCTTACTTGGCCTTGTCTATGCTGTGGTGACACCGTTATTGCTTCCTTTCATATTGGTATTCTTCGGGCTGGCATATGTTGTCTACCGCCACCAGgtaaggaccactgcagctacttgcgagaattttattg-tgttaagttttaagtgattatgatgaactactaaattagcttgctttgtatgactatttagac

upper sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 10
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacggaacctctcttgagagtttagggg---atgtcaaacccactgatctgagtcttgtctgcttgtgttgttag------------------------------------
|||||| ||||| || || || |||||| |||| || ||     | |||||||||||| | || ||||||||| |||| |||||||| ||||| || ||||||       ||   |    | | | | ||   |   | ||   |     | || ||||||    ||  || |||||  |                                     
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattatacacgtcaaagtatgattgtattatttgagtccc--ctatttttgttgccatatatataaggtgaagacacctactttccaattgcag

upper sequence: GRMZM2G456000_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA17G01400.1 (Glycine max), 5'ss of exon 9
GTACTTCTTGCTTGGCCTTGTTTATGCTGCAGTGACGCCGTTCTTGCTTCCTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgta----cggaacg---gaacctctcttgagagtttaggggatgtcaaacccactgatctgagtcttgtctgcttgtgttgttag------------------------------------
|||||| ||||| || || || |||||| |||| || ||     | |||||||||||| | || ||||||||| |||| |||||||| ||||| || ||||||    |   | |   |||      |    |  | |  |||||    |     | || ||||||    ||  || |||||  |                                     
GTACTTTTTGCTGGGTCTAGTCTATGCTTCAGTTACACCTACTGTTCTTCCTTTCATAATAGTTTTCTTTGGGCTCGCCTATGTTGTGTTCCGTCATCAGgtagttccaagatgttagaattatattattcatgtcaaaggatg----attgtattatttgagtccc--ctatttttgttgccatatatataagttgaagacacctactttccaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67012611|gb|CO441360.1|CO441360
EST:     CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAG                         ATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
genomic: CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacg ... gtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
EST: gi|78105550|gb|DV523968.1|DV523968
EST:     CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAG                         ATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
genomic: CTTTCATATTGGTGTTCTTTGGGTTCGCATATGTTGTCTTCCGCCACCAGgtacggaacg ... gtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
EST: gi|60342392|gb|DN209365.1|DN209365
EST:     TCCGCCACCAG                         ATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT
genomic: TCCGCCACCAGgtacggaacg ... gtgttgttagATAATAAATGTCTATAATCAGCAATATGAGAGCGCCGCACAGTTCTGGCCT