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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTTGTCCAAGATTTCATGTTTATCTGAGCTGGTTGCTGAATGTCCATCTTTTGAAATCGGTGGGATACACCACCGCTATATAGGTCGACAAACACAAgtaggaattgctttttctggctccttgtttccaactaggtcattattatgcatacttaattatcttttttcgtag

Basic information

species Zea mays
transcript GRMZM2G451672_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G451672_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g33670.1 (Oryza sativa), 5'ss of exon 16
TTCCTTGTCCAAGATTTCATGTTTATCTGAGCTGGTTGCTGAATGTCCATCTTTTGAAATCGGTGGGATACACCACCGCTATATAGGTCGACAAACACAAgtaggaattgctttttctggctccttgtttccaactaggtcattattatgcatacttaattatcttttttcgtag
||||||||| |||||||||||||| |||||| ||||||| || || || || |||||||| |||||||| ||||||||||||||||| || |||||||||||||||| || |||   |  ||   |||||||||       || ||||||||||    | | | | || ||| ||
TTCCTTGTCAAAGATTTCATGTTTGTCTGAGTTGGTTGCAGAGTGGCCGTCGTTTGAAATTGGTGGGATTCACCACCGCTATATAGGGCGCCAAACACAAgtaggaactgttttcctt--ctttatgtttccaagacaa--atcattatgcatataataatctatcttgtcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88757996|gb|DY542137.1|DY542137
EST:     CTTTTGAAATCGGTGGGATACACCACCGCTATATAGGTCGACAAACACAA                         GTAATGGAAGATAACCAAGAAATTGGCGCATATATGTTTAGGAGGACAGTG
genomic: CTTTTGAAATCGGTGGGATACACCACCGCTATATAGGTCGACAAACACAAgtaggaattg ... tttttcgtagGTAATGGAAGATAACCAAGAAATTGGCGCATATATGTTTAGGAGGACAGTG