1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACGGCCGAGGCCGACCCGTTCGGGCCCCCCGACCCCTACATGCTGCAGATGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccggaccggtcgccaaagagccatccatcattccatctccatgcggatgcaatgcaaggcctggcctggcctggccagctcgaacgcgcgcggcgtgtgtgtgtgtgtccctgttgcgctcacccgtacgtgcccgcgcctctgctcggcgcgctggctgtgcctgtgcag
species | Zea mays |
transcript | GRMZM2G445575_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTGGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|148999147|gb|EE036060.2|EE036060
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|71433486|gb|DR814536.1|DR814536
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|148964848|gb|EE015712.2|EE015712
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|88751930|gb|DY536071.1|DY536071
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGATCGTCAATTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|74235597|gb|DT643511.1|DT643511
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|148930037|gb|EE285933.2|EE285933
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|149000176|gb|EE037313.2|EE037313
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACGEST: gi|76021608|gb|DT948778.1|DT948778
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
EST: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAG GCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
genomic: TGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccgga ... gcctgtgcagGCGGACCATCTCCGGCTGACGACGCTGCAGCAGATGCACAAGATCCTGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGGCCGAGGCCGACCCGTTCGGGCCCCCCGACCCCTACATGCTGCAGATGGCCACCGCGGTGGGCATACTGAAAGAGCTCGTCAACTTCGTGACCCAGgtaaaccggaccggtcgccaaagagccatccatcattccatctccatgcggatgcaatgcaaggcctggcctggcctggccagctcgaacgcgcgcggcgtgtgtgtgtgtgtccctgttgcgctcacccgtacgtgcccgcgcctctgctcggcgcgctggctgtgcctgtgcag
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