Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccacatctccattgagccaaaaatattttacgtgtattttcatgtttccacacaagaacagaaaggggctaaaatatttttcctttttgtcag

Basic information

species Zea mays
transcript GRMZM2G443985_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443985_T04 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 5'ss of exon 10
GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccacatctccattgagccaaaaatattt-tacgtgt-attttcatgtttccacacaagaacagaaaggggctaaaatatttttcctttttgtcag-----------------------
||||||||||||| ||||||||||| || ||||| |||||||||  | ||||||||  |  |||  |||| |||| ||  | | ||||   || ||  ||  || ||   ||||||| | || | | |    ||   || ||                       
GTTTTATTGCACACTATGCTACTCTAGCCAGCAGAGACGTGgtatgttcacatctctgtcaagctgaaaacatttatatatatcatttctgtgattttactaaaaaa---aaaggggtttaattttctccaattgaggtgagaaactttttttatattttgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32938375|gb|CF043194.1|CF043194
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|6095550|gb|AW120217.1|AW120217
EST:     GGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
genomic: GGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|32938968|gb|CF043787.1|CF043787
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|488227|gb|T18808.1|T18808
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCG-A
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|32939806|gb|CF044625.1|CF044625
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTACTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|32939493|gb|CF044312.1|CF044312
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|76921243|gb|DV168509.1|DV168509
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTATTTGGAAGGCGAAGGCGGA
EST: gi|211132969|gb|FL170874.1|FL170874
EST:     GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTG                         GATTGTTGCTTGATCCCAGAATCACCATTCTA
genomic: GTTTTATTGCACATTATGCTACTCTGGCTAGCAGGGACGTGgtacatccac ... tttttgtcagGATTGTTGCTTGATCCCAGAATCACCGTTCTA