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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATTATAAGTGGGCCTTGGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatctactatgttcctttccattcattactacatccttttgttttccaacagatcttcataattaatttcttaatag

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76285204|gb|DV024772.1|DV024772
EST:     GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG                         ATGACATGGAGATTGCCC
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCC
EST: gi|71439957|gb|DR821007.1|DR821007
EST:     GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG                         ATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
EST: gi|148986617|gb|EE030388.2|EE030388
EST:     GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG                         ATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
EST: gi|74244431|gb|DT652345.1|DT652345
EST:     GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG                         ATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTACTTCGAGGCTGCAGCTA
EST: gi|149082839|gb|EE172063.2|EE172063
EST:     GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAG                         ATGACATGGAGATTGCCCCGGATTTTTT
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTT
EST: gi|211529739|gb|FL258565.1|FL258565
EST:     GGACAACCTATTCATTAAACATAATTTTGCTCGAGTAATCATTCTAGA-G                         ATGACATGGAGATTGCCC-GGAATTTTTCGACTAC
genomic: GGACAACCTATTCATTAAACATAATTTTGCTCGAGTGATCATTCTAGAAGgtctgatatc ... ttcttaatagATGACATGGAGATTGCCCCGGATTTTTTCGACTAC