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GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgactattcttctcatactgtcattttcttttactactttgttgagatattgcactgtttgctggtagtaatttaacaaaaaagaccactgcattatattgaatgatattaaacaatagaagatatacaaattgctattcataggatttattgacaaattgttggtttaacttttag
species | Zea mays |
transcript | GRMZM2G420865_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|211352888|gb|FL146172.1|FL146172
genomic: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: GATGTTGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|67031210|gb|CO459959.1|CO459959
genomic: GATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|211352883|gb|FL146167.1|FL146167
genomic: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: GATGTTGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|4887454|gb|AI677553.1|AI677553
genomic: GATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|211352882|gb|FL146166.1|FL146166
genomic: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: GATGTTGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|31349040|gb|CD433397.1|CD433397
genomic: GATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|211352886|gb|FL146170.1|FL146170
genomic: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: GATGTTGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|211352887|gb|FL146171.1|FL146171
genomic: GATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: GATGTTGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|211352885|gb|FL146169.1|FL146169
genomic: GATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: GATGTTGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|4887453|gb|AI677552.1|AI677552
genomic: GATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGAEST: gi|78090029|gb|DV518403.1|DV518403
genomic: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
EST: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGT GGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
genomic: TCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgact ... taacttttagGGGATTGATATTGTTGGTGTTCAGACTGTAATAAATTTCGCATGCCCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGGAACTTTTCAAGAAAAAAGAAGTAGATTTTTTGATTGCAACTGATGTCGCTGCTCGTgtaagtgactattcttctcatactgtcattttcttttactactttgttgagatattgcactgtttgctggtagtaatttaacaaaaaagaccactgcattatattgaatgatattaaacaatagaagatatacaaattgctattcataggatttattgacaaattgttggtttaacttttag
- - - - - - - AAGAAA
- - - - - - - - - - AAAGAA
- - - - - - - - - - - AAGAAG
- - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT