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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGGCTATGGAATTACTCTTTTAGAGCTTATTACAGGACAACGTGCCTTCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagttaactgtgccatttcctctgttcaaattgtaccccaagtgttcatgccttttttgtggcttccgtactgtgcaggggctggtgctcaccttttcc...

Basic information

species Zea mays
transcript GRMZM2G384439_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 10
ATTTGGCTATGGAATTACTCTTTTAGAGCTTATTACAGGACAACGTGCCTTCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagttaactgtgccatttcctctgttcaaattgtaccccaagtgttcatgccttttttgtggcttccgtactgtgcaggggctggtgctcaccttttcc-----
|||||| ||||| ||||  ||||| |||||||| ||||||||||||||||| || || |||||||| || |||||||||||||||||||| || ||||||||| || |||    || | | ||  ||||||||| |  |||  | |||||||| |||| |||||||   |  ||||  |||  |       |  |  |       
ATTTGGTTATGGGATTATGCTTTTGGAGCTTATAACAGGACAACGTGCCTTTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGGgtaattgactagcacaat-cttcaattcaaattgcagtcca--tattcatgccctttt-gtggcttg-atgttgtgttgggagttagataaaattacttttatgt

upper sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 10
ATTTGGCTATGGAATTACTCTTTTAGAGCTTATTACAGGACAACGTGCCTTCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagttaactgt-----gccatttcctctgttcaaattgtaccccaa-gtgttcatgccttttt-tgtggcttccgtactgtgcaggggctggtgctcaccttttcc
 ||||| ||||||||||  ||||||||||| ||||| |||||  | || || ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||   |  | |     |   ||||   | ||   ||| ||    ||  || | | | ||   | | |||    | | ||   |    ||   || || |||||   
TTTTGGTTATGGAATTATGCTTTTAGAGCTAATTACTGGACAGAGGGCATTTGATCTTGCTCGACTTGCAAATGATGATGATGTCATGCTGCTTGATTGGgtatgcatttatcctcagttctttctattattagtattttatttgaatatggtaaggtctccatatatggt---cattcttcccccaagc-aatggtcgccttt---

upper sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
ATTTGGCTATGGAATTACTCTTTTAGAGCTTATTACAGGACAACGTGCCTTCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagtta--actgtgccatttc-ctctgttcaaattgtaccccaagtgttcatgccttttttgt--ggcttccgtactgtgcaggggctggtgctcaccttttcc-
 || || ||||||||||  ||| | ||||| || || || ||  | || || ||||| ||||| ||||| |||||||||||||||||| | ||||| ||||||   |  |||||    || | | || | |  |||  ||| |     ||  ||||   ||||   |  ||   ||   |    ||     ||| || ||||    
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccac-----ttactgccccctttgccagtattttttaagctaacaggataaatgc-catctttctta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33770769|gb|CF273063.1|CF273063
EST:     TCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGG                         GTCA-GGGGTTGCTCA-GGAGAAGAAACTGGAGAGTCTGGTCGACGAAGAT
genomic: TCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagttaact ... ctttacttagGTCAAGGGGTTGCTCAAGGAGAAGAAACTGGAGAGTCTGGTCGACGAAGAT
EST: gi|148946222|gb|EC891519.2|EC891519
EST:     TCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGG                         GTCAAGGGGTTGCTCAAGGAGAAGAAACTGGAGAGTCTGGTCGACGAAGAT
genomic: TCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagttaact ... ctttacttagGTCAAGGGGTTGCTCAAGGAGAAGAAACTGGAGAGTCTGGTCGACGAAGAT