Sequence
atgc intronic sequence ATGC exonic sequenceTAATGCATTAAAAGAGCAGCTCCAAGCAAATCCATTGCTTGGAAATCCAAGCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAGgtattaccaagactactacattgatctgtattgcattagtgtgcctaccttttgaacttttggaacaagaaatttcagttatatatttcaagcaataata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 4
TAATGCATTAAAAGAGCAGCTCCAAGCAAATCCATTGCTTGGAAATCCAAGCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAGgtattaccaagactactacattgatctgtattgcattagtgtgcctaccttttgaacttttggaacaagaaatttcagttatatatttcaagcaataata---------------
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CAATGCACTGAAAGAGCAGCTGCAAGCAAACCCATTGCTTGGAGACCCTAGTAAAGTTTTACTGCTTGCATGTCATGGTTCAATGGCTAGCTCAGAGCAGgtattacaa------caatggtgatcta------atttatatgtttattgtt---acttttagcacagccatgctcagttctctgttttaagcaatggaatattgattggcctac
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 13
TAATGCATTAAAAGAGCAGCTCCAAGCAAATCCATTGCTTGGAAATCCAAGCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAGgtattacc----------aagactactacattgatctgtattgcat-tagtgtgcctaccttttgaacttttggaacaaga-aatttcagttatatattt-caagcaataata--------------------------------------------------------------------------------------
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AAGCTCTCTGAAAGAGAAGCTCCTGACACATACTGTCTTGGGAGATGCAAACCGTGTTTTGTTGCTTACATGTCATGGCTCAATGGCTAGTTCAGAGCAGgtaatgttctgtctgttgatgactactttgttagagttgattttatacaatctgtatgtatgatgatttgttgtctgaaaatagttttagcaatatgtttgtgcttagtcttttgttgaagaaaggtggcatgtgccttgtctccctggttatgatcaatatttacatagatttacataatggatatggcaatatgcag
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 10
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 10
TAATGCATTAAAAGAGCAGCTCCAAGCAAATCCATTGCTTGGAAATCCAAGCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAGgtattaccaagac-tac-----tacattgatc-tgtattgcattagtgtgcctaccttttgaacttttggaacaagaaatttcagttatatatttcaagcaataata
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AAGTTCTCTGAAAGATAAGCTCCAAGCTCATCCCATATTGGGAGATTCAGACCAAGTTTTGTTGCTCACATGCCATGGTTCTATGGCTAGTGCAGAGCAGgtaatttaaatatatatatatatatattaataatctatttcattggtctgaataaacgtgtgctactcagttctgcatatgtta-cagcacatatcaactg------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31351858|gb|CD436215.1|CD436215EST: GCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAG AAATTAATATTTGATAAGCCTGAGCCTGGAGTAAGGAAAATAGTTCTTGCC
genomic: GCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAGgtattaccaa ... ttttgtgcagAAATTAATATTTGATAAGCCTGAGCCTGGAGTAAGGAAAATAGTTCTTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGCATTAAAAGAGCAGCTCCAAGCAAATCCATTGCTTGGAAATCCAAGCGCAGTTTTGTTGCTCGCTTGTCATGGCTCTATGGCCAGTTCAGAGCAGgtattaccaagactactacattgatctgtattgcattagtgtgcctaccttttgaacttttggaacaagaaatttcagttatatatttcaagcaataata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaagaaa