1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CAGGGCGGTGACATAGTTAGAGGTGACGGCAAAGGGAGTGAGTCTATATATGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattattcagccagtgaactttatcatccagtttgcactttgcctctgttgaagttcatgtgtactcagttacacatttattttcaaggaaaccac...
species | Zea mays |
transcript | GRMZM2G371271_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|87151676|gb|DY396465.1|DY396465
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattat ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|32930654|gb|CF035466.1|CF035466
genomic: TAAAACATACACATCCAGgtgtgattat ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattat ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGCGGTGACATAGTTAGAGGTGACGGCAAAGGGAGTGAGTCTATATATGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattattcagccagtgaactttatcatccagtttgcactttgcctctgttgaagttcatgtgtactcagttacacatttattttcaaggaaaccac
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG