1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttccctcatttctgctgctttggccgtgcttatccatcaacttaccacactttgacttaagacattttaatattttcttgtctttggtctgat...
species | Zea mays |
transcript | GRMZM2G366935_T09 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGEST: gi|71766680|gb|DR964617.1|DR964617
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGEST: gi|76915207|gb|DV165881.1|DV165881
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGEST: gi|71760328|gb|DR958265.1|DR958265
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGEST: gi|24765506|gb|CA400665.1|CA400665
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCCGAGCTGGCAGACTTGEST: gi|5607698|gb|AI901365.1|AI901365
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGEST: gi|166490845|gb|EG161148.1|EG161148
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: AGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCEST: gi|74242829|gb|DT650743.1|DT650743
genomic: AGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGC
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTGEST: gi|71775054|gb|DR972932.1|DR972932
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
EST: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAG GACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
genomic: CTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttc ... acaacttcagGACTTGGTATCGAGGAACGCTGGCCATTCGAAGGCAGAGCTGGCAGACTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttccctcatttctgctgctttggccgtgcttatccatcaacttaccacactttgacttaagacattttaatattttcttgtctttggtctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA