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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGCTATATGGCTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaattattctctcaacttattactctcttttatag

Basic information

species Zea mays
transcript GRMZM2G350818_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 5'ss of exon 15
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGCTATATGGCTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaattattctctcaacttattac------tctcttttatag
||||||||| ||||||||  | ||||||||||| |||||||| || |||||||||||||||||||| || ||||| |||||||||| |||||| ||||||||| |||||  | |||||||   ||||||| | |  || | |  ||| | | ||| | | | | ||| ||          ||||| ||
TCAAAGGTTGCCAATGTCATTAATCTTTGGAGGCGATGGAAGTTACATGGCTCCATTTTCACTTCACAGTGACAGTGTGGTCACAAGTCTTATTAGTCAGgtttattctgaaacatttcaagctgtactgga-tcactaagt-gaacaattcattttattagcatataacatgaacatatttttacag

upper sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA04G09230.1 (Glycine max), 5'ss of exon 17
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGCTATATGGCTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaattattctctcaacttattactctcttttatag-------------------------------------
| ||||||| ||||||||  ||   ||||||||||||||||| ||||||||||||||  | ||||| | ||| |   |  | || |  || || |||||||||  ||  ||    ||   ||    | |   ||      ||  |   |   |    |   |||| ||  ||   |||   |                                     
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGgtttgtttatcgattttgaggaactcaattttatgcacagatgcacttagacacgtgccttactttttgttccaattttctgaatttaattatatgcatacttttaatgttgtttgcag

upper sequence: GRMZM2G350818_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA06G09360.1 (Glycine max), 5'ss of exon 17
TCAAAGGTTTCCAATGTCCCTGATCTTTGGAGGTGATGGAAGCTATATGGCTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattcttcatcatttcagattgtactgaaattgctgaattaaaccaatt-----attctctcaacttattactctctt-ttatag-------------------------------------
| ||||||| ||||||||  ||   ||||||||||||||||| ||||||||||||||  | ||||| |  || |   |  | || |  || || |||||||||  || || |||  ||  |   | ||| || ||  || |   |  || ||     ||   |   |||| ||  ||  || |||| |                                     
TGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAATGATAATATCCTTACCAGCCTCATGAGTCAGgtt--ttgtttatcgattttggg-gaacttaattttatgcacagatgcactttagacatatgccttactttttgttccattcttatggaatttaattatatgcatacttttaatgttatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015716|gb|CO444465.1|CO444465
EST:     CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAG                         GCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
genomic: CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattctt ... tcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
EST: gi|31348714|gb|CD433071.1|CD433071
EST:     CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAG                         GCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
genomic: CTCCATTTTCACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattctt ... tcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
EST: gi|211366115|gb|FL398815.1|FL398815
EST:     CACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTYAG                         GCTGTG-CATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG
genomic: CACTTCATAGCGACAGAGTGGTCACAACTCTTATAAGTCAGgttgattctt ... tcttttatagGCTGTGCCATCATCTATATGGCATCGTCTTGTAGCTGGATTGAATGCCCAG