1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCGGAGTGCAAGATCGCGGGGCGCGCCATCAACGCGGCGGCCATCCAGGGGCTGGTTCTCGGGTGCACGGCGCACTGCTCCTCCGGGCATgtaagtgccctcctccatccaccaccatcgcatgcatcctccacaccatcattgggggtcaaagaacgtgcgtgtgcgcagcgaggagcacgaaaatgcgttgctatgctaacccgtcgcttttgttggtcggtgcatcgatcgcgcgcgcag
species | Zea mays |
transcript | GRMZM2G350205_T04 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCATCCAGGGGCTGGTTCTCGGGTGCACGGCGCACTGCTCCTCCGGGCAT TGGCTGCGGGCTTTGCTGCGCTACCCGAGGACGACGACGAAGGCGAGCCGGEST: gi|71767281|gb|DR965218.1|DR965218
genomic: CCATCCAGGGGCTGGTTCTCGGGTGCACGGCGCACTGCTCCTCCGGGCATgtaagtgccc ... gcgcgcgcagTGGCTGCGGGCTTTGCTGCGCTACCCGAGGACGACGACGAAGGCGAGCCGG
EST: TGCTCCTCCGGGCAT TGGCTGCGGGCTTTGCTGCGCTACCCGAGGACGACGACGAAGGCGAGCCGGEST: gi|78073784|gb|DV502218.1|DV502218
genomic: TGCTCCTCCGGGCATgtaagtgccc ... gcgcgcgcagTGGCTGCGGGCTTTGCTGCGCTACCCGAGGACGACGACGAAGGCGAGCCGG
EST: CCATCCAGGGGCTGGTTCTCGGGTGCACGGCGCACTGCTCCTCCGGGCAT TGGCTGCGGGCTTTGCTGCGCTACCCGAGGACGACGACGAAGGCGAGCCGG
genomic: CCATCCAGGGGCTGGTTCTCGGGTGCACGGCGCACTGCTCCTCCGGGCATgtaagtgccc ... gcgcgcgcagTGGCTGCGGGCTTTGCTGCGCTACCCGAGGACGACGACGAAGGCGAGCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGAGTGCAAGATCGCGGGGCGCGCCATCAACGCGGCGGCCATCCAGGGGCTGGTTCTCGGGTGCACGGCGCACTGCTCCTCCGGGCATgtaagtgccctcctccatccaccaccatcgcatgcatcctccacaccatcattgggggtcaaagaacgtgcgtgtgcgcagcgaggagcacgaaaatgcgttgctatgctaacccgtcgcttttgttggtcggtgcatcgatcgcgcgcgcag
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