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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAAAGTGCTACTGCCGCTCTCAACTCTAGCGGTGTGGTACTGGGATCCTTGCCAATAAGgtaaaactctgactgatcttcttacgctttgcattgaggaaggagctcttctggacggttggataacagagccgttctaatgtgttttcag

Basic information

species Zea mays
transcript GRMZM2G349794_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G349794_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g02330.1 (Oryza sativa), 5'ss of exon 9
GCAGAAAGTGCTACTGCCGCTCTCAACTCTAGCGGTGTGGTACTGGGATCCTTGCCAATAAGgtaaaactctgactgatcttcttacgctttgcattgaggaaggagctcttctggacggttggataacagagccgttctaatgtgt-tttcag
|| |||||||| ||||| ||||||||||  || |||||  ||||||| |||||||||||||||||||  | ||     ||   |   |       |||   ||  |  |  | |  ||||    || || ||| ||   |    | | ||||||
GCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAAGgtaaagatgtggtctttcacatattgacagcttttgtacaaacaagttattt--acgg--aaatgactgaggcggctttgcttatatttcag