Sequence
atgc intronic sequence ATGC exonic sequenceATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgccttcttattttctcttcttctttttggtataagatcttctatgtaatcatatagtatgttacaaaaactatggccattcaatgaacacatttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G330772_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os07g07000.1 (Oryza sativa), 5'ss of exon 10
ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgccttcttattttctcttcttctttttggtataagatcttctatgtaatcatatagtatgttacaaaaactatggccattcaatgaacacatttc---------
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ATACTGGACACTGTTGCAGAGATACAGGAACGTCACGATGCTGTAAGAGATCTAGAGAGGAAGCTTCTGGAGTTGCAGCAGgtgac-ttttttgacataagcacttatttactaatctgatttaatccatatgcttgtg-agctcgagttaatgtgcctaattactccattccttgtttttgccttgtag
upper sequence: GRMZM2G330772_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv08s0032g00440.t01 (Vitis vinifera), 5'ss of exon 11
ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgccttcttattttctcttcttctttttggtataagatcttctatgtaatcatatagtatgttacaaaaactatggccattcaatgaacacatttc-------
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ATAATGGACACATTGGCTGAAATTCAAGAGCGACATGATGCAGTTAGAGAAGTAGAGAGGAAGCTTCTTGATCTACAGCAGgt-atatttcatcattcccttgcatttgctctttt------ttttttttctaataaaatctttattttttaaacacatgactgcatactaatcacatgttaagtataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60359751|gb|DN226724.1|DN226724EST: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAG ATATTCATGGACATGGCAGTTCTTGTTGAGGCGCATTGAGACATGATC
genomic: GACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgcctt ... tgtgttttagATATTCATGGACATGGCAGTTCTTGTTGAGGCGCAAGGAGACATGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACTAGACACTGTTGCTGAAATACAGGAGCGACATGATGCTGTAAGGGATCTAGAGAGGAAGCTTCTGGAGTTGCAACAGgtgatgccttcttattttctcttcttctttttggtataagatcttctatgtaatcatatagtatgttacaaaaactatggccattcaatgaacacatttc
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA