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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAATTGCTTGTCCTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaacaaatgatattagaaattcaatttttctattgaaatatacatcacatcaatatttatttaggtgtcattttgtcag

Basic information

species Zea mays
transcript GRMZM2G315931_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315931_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 5'ss of exon 10
GTAATTGCTTGTCCTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaacaaatgatattagaaattcaatttttctattgaaatatacatcacatcaatatttatttaggtgtcattttgtcag
||||||||||| || ||||| |||||||| ||||| ||||||||||| |||||| | |||||  ||||| |            || |     | || | |   |||| ||| |||||| | | | || ||  |||
GTAATTGCTTGCCCATGTGCCCTTGGGCTCGCCACACCCACTGCTGTGCTGgtatgcaacaa--gatatga----------ccttttgcctgagtaaatagtccatccataattatttggatat-atgtttccag

upper sequence: GRMZM2G315931_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S121_53V6.1 (Physcomitrella patens), 5'ss of exon 11
GTAATTGCTTGTCCTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaacaaatgatattagaaattc----aatttttctat--tgaaatat--acatcacatcaatatttatttaggtgtcattttgtcag---------
|| |||||||| |||||||||||||| ||||| ||||| || ||||| |||||| | ||| | |   | ||   ||      | | | |  ||  |||| | |  |      | |||  ||  |||   |   ||| |  | |         
GTCATTGCTTGCCCTTGTGCTCTTGGACTTGCGACTCCTACAGCTGTTCTGgtatgcaactagtaggaatatggatgtgtagagtctgttgatgctgaagtgttgaagctctagcaaggtt-gtttgtattaaattatacctggatcttagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13237190|gb|BG355204.1|BG355204
EST:     TAATTGCTTGTCCTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTG                         GTTGGCACTTCATT
genomic: TAATTGCTTGTCCTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaaca ... attttgtcagGTTGGCACTTCATT
EST: gi|211170366|gb|FL103275.1|FL103275
EST:     CTTGGGCTTGCCACTCCCACTGCTGTACTG                         GTTGGCACTTCATTAGGTGCAACAAGAGGACTTCTTTTACGTGGTGGGGAT
genomic: CTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaaca ... attttgtcagGTTGGCACTTCATTAGGTGCAACAAGAGGACTTCTTTTACGTGGTGGGGAT
EST: gi|13125965|gb|BG316640.1|BG316640
EST:     CTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTG                         GTTGGCACTTCATTAGGTGCAACAAGAGGACTTCTTTTACGTGGTGGGGAT
genomic: CTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaaca ... attttgtcagGTTGGCACTTCATTAGGTGCAACAAGAGGACTTCTTTTACGTGGTGGGGAT
EST: gi|13237050|gb|BG355064.1|BG355064
EST:     TAATTGCTTGTCCTTGAGCTCTTGGGCTTGCCACTCCCACTGCTGTACTG                         GTTGGCACTTCATTAGGTGCAACAAGAGGACTTCTTTTACGTG
genomic: TAATTGCTTGTCCTTGTGCTCTTGGGCTTGCCACTCCCACTGCTGTACTGgtaggaaaca ... attttgtcagGTTGGCACTTCATTAGGTGCAACAAGAGGACTTCTTTTACGTG