1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATTGGGGTACTGTATTGCAGCTGCAGTAGCTGAACCTGAATGACTCGTGGTTGCTGTGGAGGGCGATTCTGGATTTGGCTTCGGTGCAATGGAGGTTGAGgtacgaatacaaacatgacagcttcactttgaaagactaatctctactactctataagtctgcatgggttgctttatagtttgctcttagagttattggtcaagctgcttcttgtatctctggaatgcgatattatattggttaatataacaacatgcaccccttgaattttaag
species | Zea mays |
transcript | GRMZM2G311165_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGTGGAGGGCGATTCTGGATTTGGCTTCGGTGCAATGGAGGTTGAG GTGAACAGGGGCTTCAACAGTGATGCTGTTTTAGCAATGGAGACGATCCATEST: gi|50329634|gb|CO524760.1|CO524760
genomic: TTGCTGTGGAGGGCGATTCTGGATTTGGCTTCGGTGCAATGGAGGTTGAGgtacgaatac ... gaattttaagGTGAACAGGGGCTTCAACAGTGATGCTGTTTTAGCAATGGAGACGATCCAT
EST: TTGCTGTGGAGGGCGATTCTGGATTTGGCTTCGGTGCAATGGAGGTTGAG G-G----G---CTTCAACAGTGATGCTGTTTTAGCAATGGAGACGATCCAT
genomic: TTGCTGTGGAGGGCGATTCTGGATTTGGCTTCGGTGCAATGGAGGTTGAGgtacgaatac ... gaattttaagGTGAACAGGGGCTTCAACAGTGATGCTGTTTTAGCAATGGAGACGATCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGGGTACTGTATTGCAGCTGCAGTAGCTGAACCTGAATGACTCGTGGTTGCTGTGGAGGGCGATTCTGGATTTGGCTTCGGTGCAATGGAGGTTGAGgtacgaatacaaacatgacagcttcactttgaaagactaatctctactactctataagtctgcatgggttgctttatagtttgctcttagagttattggtcaagctgcttcttgtatctctggaatgcgatattatattggttaatataacaacatgcaccccttgaattttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG