1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AAAGTCTGAGAGGTCTCCGCAAGAAAACGAGCTTGCCGATGCCAAATTTGCCTGGCTTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAGgtttgtgatttcctaggtgttatcgaagtaaattttgcaagctaatacatactacttgtttaatcactgaagccactaaatggtccccacctgatactgtgtctgtag
species | Zea mays |
transcript | GRMZM2G306374_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCTGGCTTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAG AACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGCEST: gi|211220061|gb|FL422619.1|FL422619
genomic: CCTGGCTTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAGgtttgtgatt ... gtgtctgtagAACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGC
EST: TTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAG AACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGCEST: gi|71761197|gb|DR959134.1|DR959134
genomic: TTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAGgtttgtgatt ... gtgtctgtagAACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGC
EST: AAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAG AACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGCEST: gi|89247992|gb|DY619778.1|DY619778
genomic: AAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAGgtttgtgatt ... gtgtctgtagAACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGC
EST: CCTGGCTTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAG AACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGC
genomic: CCTGGCTTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAGgtttgtgatt ... gtgtctgtagAACAACTGCATGCTGGGAATGGGCAGTGGTCAGCCGAACAGGCGAGAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTCTGAGAGGTCTCCGCAAGAAAACGAGCTTGCCGATGCCAAATTTGCCTGGCTTTGCGCAAAACATGTCAAGAGCAATGCGATTGTGATAGCCAAGgtttgtgatttcctaggtgttatcgaagtaaattttgcaagctaatacatactacttgtttaatcactgaagccactaaatggtccccacctgatactgtgtctgtag
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