Sequence
atgc intronic sequence ATGC exonic sequenceTGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatccttagtgtatcaattgagtatatataaatggttaatctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g20630.1 (Oryza sativa), 5'ss of exon 10
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatcc--ttagtgta--tcaattga-gtat-atataaatggttaatctgcag
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TGTCAATGTCCAGAATGCAGTTGCAGAGATACATGGGGTGACTATGAATGTACTTGCAGTGGGGACCTACTGTACATCAAAGAGCATGATACTTGCATAAgtaatttctaaattttttgtgatatttgtttcatccaactattgtaggtcacttgatatattatttgtttgatcaatctgcag
upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA10G40340.1 (Glycine max), 5'ss of exon 10
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaattt-ccaactcaactgatag-cttttgctt--atccttagtgtatcaattgagtatatataa-----atggttaatctgcag
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TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGACACTTGCATAAgtgagttattaatgcacttgatattcttttacttgcatggcatttgaattgcttggtttcatttatttcctactggtattctgcag
upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA11G00370.1 (Glycine max), 5'ss of exon 10
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatccttagtgtatcaattgagtatatataaatggttaatctgcag----------------------
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TGTCAGTGCCCTGAATGTAGCTGCAAGAATACGTGGGGAAGCTATGACTGCAGTTGTAGTGGAGATCTTCTGTATATGAGGGACCACGATACCTGCATAAgtgagttgaa---tatgcaagactttttacttgctcctacatttgcatatgtttgt-tataaaggcttgttttcatgtcctctactggattacctacag
upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G27000.1 (Glycine max), 5'ss of exon 10
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagc-ttttgctt--atccttagtgtatcaattgagtatatata------aatggttaatctgcag
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TGTCAGTGCCCTGAATGTAGCTGCAAGAATACTTGGGGAAGCTATGACTGCACTTGCAGTGGGGATCTTTTGTATATAAGGGACCACGATACTTGCATAAgtgagtta-aatacacttgatatccttttacttgcatggcatttgaattgcttggtttcatttatttccaactgggtatcctgcag
upper sequence: GRMZM2G303631_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv03s0091g00740.t01 (Vitis vinifera), 5'ss of exon 10
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatcct-tagtgtatcaattgagtatatataaatggttaatctgcag------------------------------------
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TGTCAGTGCCCTGAATGCAGCTGCAAAAACACATGGGGTAGCTACGAGTGCACTTGCAGTGGGGATCTTTTGTATATCAGGGACCATGATACCTGCATAAgtgagtt--aaacaaccagagttctataacctatcaaacaaaaaaacaaccagacttctgtaaatgtctg-tttgcacacaaataatatacttcccctccatggtcatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|101394205|gb|EB819037.1|EB819037EST: CACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAA GCAAGACAGCAGTTCAGGCTAAAGCAGCATGGGCTGCAGTGTGGGGTATCT
genomic: CACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttcca ... taatctgcagGCAAGACAGCAGTTCAGGCTAAAGCAGCATGGGCTGCAGTGTGGGGTATCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCAGTGTCCTGAATGCAACTGCAAAGATACATGGGGTGGCTATGACTGCACTTGCAGTGGTGACCTTTTGTACATCAGAGAGCATGACACCTGCATAAgtaatttccaactcaactgatagcttttgcttatccttagtgtatcaattgagtatatataaatggttaatctgcag
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