1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGGgttagtgttgcgtattcattctgctattgcattaccataagtttctaatatcctcatttgcttagtacag
species | Zea mays |
transcript | GRMZM2G180418_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGG GGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGAAAAGTTGATEST: gi|6431812|gb|AW172016.1|AW172016
genomic: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGGgttagtgttg ... cttagtacagGGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGTAAAGTTGAT
EST: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGG GGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGTAAEST: gi|94477086|gb|EB706044.1|EB706044
genomic: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGGgttagtgttg ... cttagtacagGGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGTAA
EST: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGG GGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGTAAAGTTGATEST: gi|211350103|gb|FL241788.1|FL241788
genomic: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGGgttagtgttg ... cttagtacagGGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGTAAAGTTGAT
EST: TTGATCTTGTCAAAGAACCTGAAGTGTYGTCCTTGGTTGAGCGTATAAGG GNGTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGT
genomic: TTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGGgttagtgttg ... cttagtacagG-GTATCAACCACATGGCTAATTTGAAGCGAGCTGAGTATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATCTTGTCAAAGAACCTGAAGTGTTGTCCTTGGTTGAGCGTATAAGGgttagtgttgcgtattcattctgctattgcattaccataagtttctaatatcctcatttgcttagtacag
- - - - - - AAAGAA
- - - - - - AAGAAC
- - - - - - - - - CTGAAG