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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTTTCAACAATTCATAGAATGGACAAAGGAGCTACCCGCTACGACCAGAGTTGATTGAAAGCACATATTGGTTGTTCAAGGCTACCAGAGATTACAGgtgggtttttctttacaaggtgaagatataatttattttgttgtatacaaactttatggttttggttgcaatcttccttactgttagaaagaaaaggaga...

Basic information

species Zea mays
transcript GRMZM2G173868_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173868_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g56670.4 (Oryza sativa), 5'ss of exon 13
CTGTTTTCAACAATTCATAGAATGGACAAAGGAGCTACCCGCTACGACCAGAGTTGATTGAAAGCACATATTGGTTGTTCAAGGCTACCAGAGATTACAGgtgggtttttctttacaaggtgaagatataatttattttgttgta-tacaaactttatggttttggttgcaatcttccttactgttagaaagaaaaggaga--------------------
                    ||||||||||||||||||||||| || || || ||||||||||||||||||||| ||||||||||||| |||||||| ||||| || ||| | ||||||||||| ||| || ||||| | || || ||      ||| | ||||   |||||| | ||  |  ||  ||||  ||| ||||                    
--------------------AATGGACAAAGGAGCTACCCGCTGCGGCCTGAATTGATTGAAAGCACATATTGGCTGTTCAAGGCTACTAGAGATTATAGGTGTGTCTTTATCTACAAGgtgaaaatagaagttattcttttttaataatgctcttaggtttttaaatgcaatttccccaatggt--gaaaagaaacgagatttgagcgaggttcaatatg

upper sequence: GRMZM2G173868_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 13
CTGTTTTCAACAATTCATAGAATGGACAAAGGAGCTACCCGCTACGACCAGAGTTGATTGAAAGCACATATTGGTTGTTCAAGGCTACCAGAGATTACAGgtgggtttttctttacaaggtgaagatataatttattttgttgta-tacaaactttatggttttggttgcaatcttccttactgttagaaagaaaaggaga-
                    ||||||||||||||||||||||| || || || ||||||||||||||||||||| ||||||||||||| |||||||| ||||| || ||| | ||||||||||| ||| || ||||| | || || ||      ||| | ||||   |||||| | ||  |  ||  ||||  ||| |||| 
--------------------AATGGACAAAGGAGCTACCCGCTGCGGCCTGAATTGATTGAAAGCACATATTGGCTGTTCAAGGCTACTAGAGATTATAGgtgtgtctttatctacaaggtgaaaatagaagttattcttttttaataatgctcttaggtttttaaatgcaatttccccaatggt--gaaaagaaacgagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32834027|gb|CD973705.1|CD973705
EST:     GAGTTGATTGAAAGCACATATTGGTTGTTCAAGGCTACCAGAGATTACAG                         ATACCTTGATGTTGGAAGGGACATATTAGCAAGCCTTCAATATGGTGCCAG
genomic: GAGTTGATTGAAAGCACATATTGGTTGTTCAAGGCTACCAGAGATTACAGgtgggttttt ... attaatgcagATACCTTGATGTTGGAAGGGACATATTAGCAAGCCTTCAATATGGTGCCAG