1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttttttaacatattttgtaatgtactacctccattttttttatttgacgctagctagttcaagtttacactaaccaacgtcaaatataaaaaactggagggagtaatttatattgacctgcttttaattattgatatgctattctgcag
species | Zea mays |
transcript | GRMZM2G172427_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|10191692|gb|BE761768.1|BE761768
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|16377285|gb|BI991856.1|BI991856
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|69351242|gb|DR452068.1|DR452068
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|32935470|gb|CF040282.1|CF040282
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: GGATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|83278797|gb|DV942805.1|DV942805
genomic: GGATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCAEST: gi|4646774|gb|AI621849.1|AI621849
genomic: AGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
EST: GATTGTTTGCTAATCAAGAT ATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
genomic: GATTGTTTGCTAATCAAGATgtaagatttt ... tattctgcagATTGCCGTAGGAGAAGAACTCGCCTATGATTACCGACAAAAGCTTGTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTCCCCGAATCTCAGTACCCGGTTGGTTTTGGTAGAGAGCAAAGATTGCCAGCTTGCTCACATTGGATTGTTTGCTAATCAAGATgtaagatttttttaacatattttgtaatgtactacctccattttttttatttgacgctagctagttcaagtttacactaaccaacgtcaaatataaaaaactggagggagtaatttatattgacctgcttttaattattgatatgctattctgcag
- - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - GCAAAG