1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGTTTGAACGGGGGAGGTCAATTAAAGCCTGTTGAAGGCCAATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGATgtaagcttctaactgaaacctaacatttcttgtaccaccctctgctctgaattattagccgttttggcttttctaagtacacagcttttgttatgcactt...
species | Zea mays |
transcript | GRMZM2G171998_T01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGAT ATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGACEST: gi|84976573|gb|DW474995.1|DW474995
genomic: AATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGATgtaagcttct ... tgtgtaccagATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGAC
EST: AATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGAT ATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGACEST: gi|6563964|gb|AW231586.1|AW231586
genomic: AATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGATgtaagcttct ... tgtgtaccagATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGAC
EST: AATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACCCCCAAGAT ATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGACEST: gi|32945287|gb|CF050106.1|CF050106
genomic: AATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGATgtaagcttct ... tgtgtaccagATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGAC
EST: TACACACAAGAT ATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGAC
genomic: TACACACAAGATgtaagcttct ... tgtgtaccagATATTAATATCTGATCCTTTCCGTAACCCTATCGCGAAAAAACTATATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGTTTGAACGGGGGAGGTCAATTAAAGCCTGTTGAAGGCCAATCTGCCAAGGAACTTATCCAGCAATTGGAGAGTGTGTACACACAAGATgtaagcttctaactgaaacctaacatttcttgtaccaccctctgctctgaattattagccgttttggcttttctaagtacacagcttttgttatgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccctc