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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTGCTTGAGTGCTTTTAACAAAGATGCTGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTTTACTACCTGgtatgttttttattcaaataaattgtttgtgcaggtttagagttaatagtgtgcgtctttggacttactttgtggtaccaattagatctcttatatatggtcggtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcag

Basic information

species Zea mays
transcript GRMZM2G171469_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g02850.1 (Oryza sativa), 5'ss of exon 10
------------ATGTGCTTGAGTGCTTTTAACAAAGATGCTGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTTTACTACCTGgtatgttttt-tattcaaataaattgtttgtgcaggtttagagttaatagtgtgcgtctttggacttactttgtggtaccaat---tagatctcttatatatggtcggtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcag
            |||||||| | ||| ||| | ||||| || ||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||  | ||||  |   ||||     ||   ||  ||||       |  || ||||   |||  | |||| |   ||   | |||||| | || ||| ||                                                        
AGCATCTTACAGATGTGCTTAAATGCGTTTGATAAAGAAGCCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttcctgttcacttgctttgt--actcaaccttgtagttttatacat-tgtttttg--tttatctcgtggcatttatatcttgatctcctcta-atg-tca-------------------------------------------------------

upper sequence: GRMZM2G171469_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g02850.2 (Oryza sativa), 5'ss of exon 10
ATGTGCTTGAGTGCTTTTAACAAAGATGCTGATCTTGATGTTCTGAACCATCCAATCCTGAACTTCTTTTACTACCTGgtatgt-tttttattcaaataaattgtttgtgcaggtttagagttaatagtgtgcgtctttggacttactttgtggtaccaat---tagatctcttatatatggtcggtcgttgcacttgctcatattcttttctgttggtgctcccttgtgacctgtgcag
|||||||| | ||| ||| | ||||| || ||||||||||||||||||||||||||||| |||||||| |||||| |||||||| ||  | ||||  |   ||||     ||   ||  ||||       |  || ||||   |||  | |||| |   ||   | |||||| | || ||| ||                                                        
ATGTGCTTAAATGCGTTTGATAAAGAAGCCGATCTTGATGTTCTGAACCATCCAATCCTAAACTTCTTCTACTACTTGgtatgtcttcctgttcacttgctttgt--actcaaccttgtagttttatacat-tgtttttg--tttatctcgtggcatttatatcttgatctcctcta-atg-tca-------------------------------------------------------