Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtgggtatcatgtttttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag

Basic information

species Zea mays
transcript GRMZM2G169773_T01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169773_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 11
ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtgggtatcatgtt-tttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag
|||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||| |||||| || | ||     ||    || ||     | | |||  | |    | ||  | |   | |||||||     |   | |  | | |||||| ||   ||                                                                
ATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGgtgagttttataaaacttgatcttagccaaagcca-aatagtaacaccttggtgtctgt-tcagcaacactccttcattctgccgttcatcatcatgcgtca---------------------------------------------------------------

upper sequence: GRMZM2G169773_T01 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA13G25460.1 (Glycine max), 5'ss of exon 11
ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtgggtatcatgtttttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag
|| || |||||||||||||||||| |||||||| ||||| |  || |||||||    || ||||||||  |  |    || ||    ||| |  ||     ||     |  || |     |||  | |    |||| | |   | |    | |  ||||    |||  ||  | |    | | ||| |                                          
ATCTTCTACTTCATTGGATTTGGATTGTTCTGCGTTGAAACTTTGATCAGCATTTGGGTTATTCAGgtttgactacacttcttgaactttccaatcatcttaagc---acatgcaccagcattt-tgaatgccatgatttccttatgaattaccacataccaactcactatttctttggtttgctatacag---------------------------------------

upper sequence: GRMZM2G169773_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 12
ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtgggtatcatgtttttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag
|| || ||||||||||| ||||||||||||||  |||||||| |||||||||||   || ||||||||     |  | |||     |  |  |   |   |||       |  |||  |  |    ||  |  |||     |    ||| ||  |||   | ||| ||   ||||||  |  | |  |                                          
ATCTTCTACTTCATTGGGTTTGGAATGTTCTGTGTTGAATCAGTGCTCAGCATCTGGGTTATTCAGgtccaacttctctttcccattcctaataatcacggaaa------gcatagctacctctgctaataggatgaatcatgcagctcttgt-tcactgtttctgtt---gtttcacctggtttgcag-----------------------------------------

upper sequence: GRMZM2G169773_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 11
ATATTTTACTTCATTGGATTTGGAATGTTCTGCCTTGAATCACTGCTCAGCATCGTTGTCATTCAGgtg-ggtatcatgtttttaccttttgctgtccctagaattctgatgtgtagggatattcattagcaacatggtgtttctgtctcatgcatcataatctctctttaagtttcaattattctagaagagagctgttttgagatattattgttctgaacttgtttcag
||||| ||| | |||||||||||| ||||||||||||||||||||||||| |||   ||  |||||||   |||   || |||    || | |||   |||    |||         | |  |  | | ||| | |||| | |   ||| |  |    |  ||||  |   | | |  |                                                    
ATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAGgttcagtagtctgatttctagttcttctgcttcta----tct------ccagcacttctact-gcatcttggtttct---tctaactctctttgttctcaatcccaatatgcag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166600640|gb|EG168684.1|EG168684
EST:     CATCGTTGTCATTCAG                         CAAGTATACATGTACTTCCGTGGAAGTGGAAAGGCTGCAGAGATGAAGCGA
genomic: CATCGTTGTCATTCAGgtgggtatca ... cttgtttcagCAAGTATACATGTACTTCCGTGGAAGTGGAAAAGCTGCAGAGATGAAGCGA