Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatgtgcattttatgcaagcttgtactcataaccatatcaattattaaagtcacttgagcacccaccattatttggatctcagcaacatttttgtctctttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168249_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 5'ss of exon 12
GTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatg--tgcattttatgcaagcttgtactcataaccatatcaattattaaagtcacttgagcacccaccattatttggatctcagcaacatttttgtctctttacag
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GAAAAAATGTTGTTTGCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTTCAGGCACCACATATTCAAgtaagtgggcactgattgcttgttttaagaaatcagactcctagt----tcactttgtaatg-cagtacattattcagttaggggttggttactgca-catactta-----------
upper sequence: GRMZM2G168249_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA15G03900.1 (Glycine max), 5'ss of exon 14
GTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatgtgcattttatgcaagcttgtactcataaccatatcaattattaaagtcacttgagcacccaccattatttggatc-tcagcaacatttttgtctctttacag
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GAAAGGGACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAgtgagttgaaatt-tgcaat--gtgctgattatttcttgataccattttt-ttactgaa--tggtagatgatgccatagggcttagacagtgaacgaagtcttgag----------
upper sequence: GRMZM2G168249_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv06s0004g02050.t01 (Vitis vinifera), 5'ss of exon 13
GTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatgtgcattttatgcaagcttgtactcataaccatatcaattatta-aagtcacttgagcacccaccattatttggatctcagcaacatttttgtctctttacag
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GAAAAGCTCTTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGAAATGTTCCAGGCACCTCAAATTCAAgtgagttgaaa--gcccactttatgt---tctcaattagaaatcctggttcttgatacaactccatttcattctaagagaaaatggaatcttggaaaaggaggta-----------
upper sequence: GRMZM2G168249_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv06s0004g00530.t01 (Vitis vinifera), 5'ss of exon 12
GTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatgtgcattttatgcaagcttgtactcataaccatatcaattattaaagtcacttgagcacccaccattatttggatctcagcaacatttttgtctctttacag
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GAAAAGCCCTTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGAAATGTTCCAGGCACCTCATATTCAAgtgagttgaaagcccacttttgttctcaattagaaatcctggttct-----tgatacaactccatttcattctaaaagaaaacggaatcttggaaaaggaagtat----------
upper sequence: GRMZM2G168249_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv13s0175g00030.t01 (Vitis vinifera), 5'ss of exon 1
-----------------------------GTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatgtgcattttatgcaagcttgtactcataaccatatcaattatta-aagtcacttgagcacccaccattatttggatctcagcaacatttttgtctctttacag
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GTCGTTCATTATATTTCTCTGCTTTCCAGGAAAAGCCCCTGTTGGAATGGCAGAGGTAGAAGCAGCCATACAGGCAATGTTCCAGGCACCTCATATTCAAgtgagttgaaa--gcccactttatgt---tctcaactagaaatcctggttcttgatacaactccatttcgttctaaaagaaaacggaatcttggaaaaggaggta-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32931679|gb|CF036491.1|CF036491EST: GTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAA GTGATGAAGAATTGCCCAAAGTTTGGAAAAGTTATACTGGTTGCCATGGTT
genomic: GTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaa ... ctctttacagGTGATGAAGAATTGCCCAAAGTTTGGAAAAGTTATACTGGTTGCCATGGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGCTGTTGTTTCCATGGGTGACATAGAAGCTGCTATTCAGGAAGTCTTCCAGGCACCTCATATTCAAgtgagtggaaaatgtgcattttatgcaagcttgtactcataaccatatcaattattaaagtcacttgagcacccaccattatttggatctcagcaacatttttgtctctttacag
- - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - GCTGCT