1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttcagtggcctgtttgatatgatgtaacatcattgtcatggaatgttcttggctaacataacatactcaattatcagatcctgaattgaaacaccatgtttgtttttatttgatgaatgatgtcgcttattgctatactgtgcaaagtttaccactatggcgctaaccgcgttgtttatgcatccag
species | Zea mays |
transcript | GRMZM2G166345_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|32913187|gb|CF017999.1|CF017999
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|31363989|gb|CD448344.1|CD448344
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|213173994|gb|FM188956.1|FM188956
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|32863847|gb|CF003529.1|CF003529
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGGTTCCCTTEST: gi|149110254|gb|EE294046.2|EE294046
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTG-TTCCCTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATTTTTGTACCGACGAGAATGGAATTGCAATGTTCAAAGGT-TTCCCTTTEST: gi|211207476|gb|FL411825.1|FL411825
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|4874363|gb|AI673883.1|AI673883
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|4573130|gb|AI586779.1|AI586779
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTCCCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|83279363|gb|DV943371.1|DV943371
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|91874366|gb|EB404323.1|EB404323
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTTGTTCCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|91873662|gb|EB403619.1|EB403619
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTTGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|71772536|gb|DR970467.1|DR970467
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|33098108|gb|CF058068.1|CF058068
genomic: CAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|211244774|gb|FL481676.1|FL481676
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|12972445|gb|BG267985.1|BG267985
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATGCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTEST: gi|4628469|gb|AI619343.1|AI619343
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCAT-CTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|211217164|gb|FL385248.1|FL385248
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|213173188|gb|FM191133.1|FM191133
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTGAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|32863787|gb|CF003469.1|CF003469
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|37381901|gb|CF627857.1|CF627857
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|32849223|gb|CD988904.1|CD988904
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|88756566|gb|DY540707.1|DY540707
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATTTTTGTTCCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|71758158|gb|DR956095.1|DR956095
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTTGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|33095762|gb|CF055756.1|CF055756
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|93280898|gb|EB673162.1|EB673162
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTTGTTCCGGCGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|211105793|gb|FL432184.1|FL432184
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|91053825|gb|EB164243.1|EB164243
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTTTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|5005650|gb|AI711712.1|AI711712
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|211165085|gb|FL207333.1|FL207333
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|76286900|gb|DV026468.1|DV026468
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|17931240|gb|BM268200.1|BM268200
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTTEST: gi|78112559|gb|DV530953.1|DV530953
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
EST: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCG CATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
genomic: CTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttca ... atgcatccagCATCTTCGTACCGACGAGAATGGAATTGCAATGTTCAAAGGTGTTCCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGATGGGAAGCCTGAAGATGTTCTAAATCCAAAGAAAAAGCAGCTGGACAAGATTACCCCGgtacacttcagtggcctgtttgatatgatgtaacatcattgtcatggaatgttcttggctaacataacatactcaattatcagatcctgaattgaaacaccatgtttgtttttatttgatgaatgatgtcgcttattgctatactgtgcaaagtttaccactatggcgctaaccgcgttgtttatgcatccag
- - - - - - - CTGAAG
- - - - - - - TGAAGA
- - - - - - - - AAGATG
- - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - GCTGGA