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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag

Basic information

species Zea mays
transcript GRMZM2G165351_T04
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag---------------------------------
| |||||||| || |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||| ||||| || |||||||| ||  |  |||||| ||||| |     ||        | | | || ||   ||     || |   | |    |||  |  || ||  |   |                                  
TACTAAAAATTCCACGAATGTTTGATCCATGGGGAGGATACAGCATCATTGGATTCGGTGACATCCTTCTACCTGGGCTGTTAGTTGCATTTGCATTAAGgttagtctcgcaaagaaaaagaaaaggtctattcttacatgtggatacaag--caagcatgttagag-atatgactgctaacagtattttttcaaaatattaatctttttccag

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgt-------aagtctaggctgcaatcttcgtggt-----tttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag--------------------------------------------------
| || || || || || ||||||||||| |||||||| |||||||||||||| ||||| || ||| |  | || || ||| |||| || || || |||||||       ||    |  |   |||  || |  |     | || |  |  || ||  |||   || ||||  | ||||     ||||||                                                      
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggatt--gatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA11G02540.1 (Glycine max), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag-----------------------
| || ||  |||| || || ||||||||||||||||| ||||||||||| || ||||| || |||||| | || ||  |  | || || ||||| || ||||   | |   || |   |||  |       || |   ||||||||   |  || |  ||      | |||||  |  ||                        
TACTGAAGTTCCCTCGTATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttt-tatttcctccctcctttcta--ccccttatcccttgcatgacttatgtcaac-ccaaaatttgatttgaataacaaggtccaaattttatggattggaa

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA09G39500.1 (Glycine max), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgt-aagtctaggct---------gcaatcttcgtggttttttttttttttgcatgaacgaattc---gattccgttgaattatttgcttttcag---------------------------------------------
| || || || || || ||||||||||| |||||||| |||||||||||||| ||||| || ||| |  | || || ||| |||| || || || |||||||  | |  |  ||         | |||| |  |  |  | || |  |    || ||   |||    ||||    |  |  ||    | | |                                               
TACTCAAGATACCACGTATGTTTGATCCTTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaactcatacataaggaatcctattcatcatcttgtactccttataaaaacatttttggattgatgtagacaatcctttatgccaagtgaatggttcatgaacttgatttttctaatgataactatacag

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G42940.1 (Glycine max), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag-----------------------
| || ||  |||| || || ||||||||||||||||| ||||||||||| || ||||| || |||||| | || ||  |  | || || ||||| || ||||   | |   || |   |||  |       || |   ||||||||   |  || |  ||      | |||||  |  ||                        
TACTGAAGTTCCCTCGGATTTTTGATCCATGGGGTGGTTACAGCATCATAGGTTTTGGAGACATCCTTTTACCAGGAATGCTGGTGGCATTCTCACTCAGgttt-tatttcctccctcctttcta--ccccttatcccttgcatgacttatgtcaac-ccaaaacttgatttgaatgacaaggtccaaattttatggattggaa

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT1G63690.2 (Arabidopsis thaliana), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattattt-gcttttcag----------------
| || || || ||||| ||||| ||||| ||||| || |||||||| ||||| ||||||||||| ||| | || ||| |  || | || ||  | || ||||    |    |   | |  ||    | | | ||   |   |||  |  | ||   || | |  | |  | | ||||| | |                
TACTGAAGATTCCGCGGATGTTCGATCCGTGGGGAGGCTACAGCATTATTGGATTTGGTGATATTCTTTTGCCCGGTTTGCTAATCGCATTTGCTCTCAGgttcaac--atccatacttctctctctctctcttaaatcatcatatat-agtttcctttcatcaagtagtatagctttcccggcatttgttcttgcag

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: AT1G01650.1 (Arabidopsis thaliana), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttc----gtggtttttt---ttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag--------------
| ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| |||||||| ||  |  | || || ||  | ||  ||||| | || ||||  | |   | | |||||| |    | | | | |    || ||  |  || || ||  || | |    ||| ||||| |      |               
TACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGCTACAGCATAATTGGATTTGGTGACATTATCTTACCAGGACTGCTTGTAACTTTCGCACTGAGgtttg-cactgttacaatctcctcttgcgctctctcacattattactatatcaa-gatctcaactaaactgagttattagaagcatacaaaagtatgaaatg

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttt---------tttttttttgcatgaacgaa-------ttcgattccgttgaattatttgcttttcag-----
| || || |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||  |  | || || ||  | || || ||||| |||||||  |   |  ||| |||  || |  ||||          |  |   ||   |||||  |       ||   ||||    |||||| |      ||      
TACTGAAGATCCCGCGAATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGATTTGGTGATATTATCTTACCGGGACTGCTTGTGGCATTCTCACTAAGgtttgatca--ctgtaataatctttattttcaaagaagtatcgtcaattttgtgaacttaacattgctttttttcccccaaattatctagagcccattttgg

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv02s0025g03400.t01 (Vitis vinifera), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgt--aagtctag------------gctgcaatcttcgtggtttttttttt--ttttgcatgaacgaattcgattccgttga-attatttgcttttcag--
| || || ||||| || |||||||||||||||||||| ||||| ||||||||||||||||| |||||  | || || ||  || | || || || || ||||  |||    |              |||||   |  || |  | ||| |  |||| | || | ||  || | | |  | | ||  |  ||   |     
TACTGAAGATCCCCCGCATGTTTGATCCATGGGGTGGTTACAGTATCATTGGCTTTGGTGACATCCTATTACCAGGACTGCTAATAGCATTTTCACTTAGgtctaagctctgcagccttttctcattgcaagaattttgctcctatttgtgcttttacttgcaggacatcaacttcaataacatcctaggcagcttcttt

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: PP1S1_478V6.1 (Physcomitrella patens), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatctt--cgtggttttttttttttttgcatgaacgaattcg-attccgttgaatt-atttgcttttcag---------------
|||| ||| | ||  |  ||| |||||| ||||| || ||||| ||||||||||||||||| ||||| || || ||  |  | ||  | ||||   || |||| ||  ||  |  ||| ||    | ||   |   |  |  |  |      ||| | | |   |||  || | | ||||  |                 
TGCTGAAAGTTCCAAGGTTGTATGATCCTTGGGGAGGTTACAGTATCATTGGCTTTGGTGACATCCTACTCCCAGGGTTGCTTGTCTCCTTCTGCTTACGgtacgttgagattttaattttactttagtcgatgagtcgtgaggtttgttagatttgtagtgtattgggtttactagcttcgcgcagccatgatgacacg

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: PP1S128_91V6.1 (Physcomitrella patens), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag--------------------
| || ||| |||| ||  ||| ||| ||||||||||| ||||||||||| |||||||| ||||| || ||||| || ||||||||  | ||||   || ||||  ||   |  |   |  || |    ||| |      ||  | || || |         ||||   |||     || |                     
TTCTGAAAGTCCCCCGGTTGTATGACCCATGGGGTGGCTACAGCATCATCGGCTTTGGAGATATTCTGCTTCCAGGACTTTTAGTGTCCTTCTGCTTACGgtatttccctgg-gtgttgctcattagatttgtgcggagtggttcaatgactatcggagacttgatccattaaaccttgacccatgctgcttagcaatttt

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: PP1S124_16V6.1 (Physcomitrella patens), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag-------------------
| || ||| | || ||  | ||||||||||||||||| ||||| |||||||| ||||| |||||  | ||||| || ||||| ||| | ||||   || ||||   |   ||     |||| |||||| ||  |    | |  || | ||||   || ||  | ||   ||||    |  |                   
TTCTTAAAGTTCCACGTCTTTTTGATCCATGGGGTGGCTACAGTATCATTGGTTTTGGCGATATTTTGCTTCCAGGACTTTTGGTTTCCTTCTGCTTACGgtactccactgcatatttctttgtggttgttactgccatcgagtggaagaataaaatgccagttaacattttgtccatgtgatgcgagtttgtttaaagt

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: EFJ28538 (Selaginella moellendorffii), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag
| || ||| | || |  || |  || || ||||| |||||||| ||||| |||||||||||||| || ||||| || |||||| |  | ||  | || ||||| |    |  | |||     | |||  ||||||      ||  |  | |                              
TCCTTAAAGTACCTCTGATTTACGACCCCTGGGGAGGATACAGTATCATAGGCTTTGGTGATATACTACTTCCAGGGCTTTTAATATCCTTTGCTCTGAGgtatgg--ggaatacaa-----gaggtcattttttaacacacaccattgcag-----------------------------

upper sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
lower sequence: EFJ20473 (Selaginella moellendorffii), 5'ss of exon 11
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctaggctgcaatcttcgtggttttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag
| || ||| | || |  || |  || || ||||| |||||||| ||||| |||||||||||||| || ||||| || |||||| |  | ||  | || ||||| |    |  | |||     | |||  ||||||      ||  |  | |                              
TCCTTAAAGTACCTCTGATTTACGACCCCTGGGGAGGATACAGTATCATAGGCTTTGGTGATATACTACTTCCAGGGCTTTTAATATCCTTTGCTCTGAGgtatgg--ggaatacaa-----gaggtcattttttaacactcaccattgcag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149112294|gb|EE295193.2|EE295193
EST:     TTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: TTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|67025992|gb|CO454741.1|CO454741
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|149073466|gb|EE161770.2|EE161770
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|149060142|gb|EE157102.2|EE157102
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|149086581|gb|EE176124.2|EE176124
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|22819684|gb|BU499774.1|BU499774
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|211215781|gb|FL437227.1|FL437227
EST:     TGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: TGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|60356079|gb|DN223052.1|DN223052
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|91054682|gb|EB165100.1|EB165100
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|32843028|gb|CD982709.1|CD982709
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|31406182|gb|CD484914.1|CD484914
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|74234147|gb|DT642061.1|DT642061
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|67024697|gb|CO453446.1|CO453446
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|32848049|gb|CD987730.1|CD987730
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
EST: gi|67017568|gb|CO446317.1|CO446317
EST:     GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAG                         ATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC
genomic: GGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 181

TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG


Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 130

TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 180

TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 169

TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgtaagtctag ... tgcttttcagATACGATTTTTCTGCAAAGAAGGGCTTACGGTCTGGTTACTTTTTGTGGGCAATGGTGGCCTATGGCTCTG