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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat...

Basic information

species Zea mays
transcript GRMZM2G164352_T05
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatact-atctcaatacc--ttatatttcctacaactgtgc-tgtgcataatataatccttg-atgctaatttatttatc-aacagtagctacaacat-----------------------------------------------------------------------------
||   ||||||  | || || || |||||||||||||| |||||||| ||||| ||||| || |||||||| |||||||| ||||| ||||||||| || ||| | || |  | | ||      | ||  |  || |   |   |   ||| |  |  ||  || | | |  | |   | || |   | |  |  || ||                                                                             
GTTCATTCAATTCGCGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctgtgtaggtttttgtgcatgtctagtggaaattgaaatatatgcttgttatatgctattacttcttctattctcctaagtgcaacttcagaagtatctatatggaatgctggaacag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatact-atctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaattt------atttatcaaca---gtagctacaacat-----------------------------------------------------------------
||   ||||||  | || || || |||||||||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||| ||||||||| || ||| |||| |  | | ||      |  |  |||| |         ||  ||  | || |   ||    |||      || | |  | |    |   | | | ||                                                                 
GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctgtgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcata-atataatccttgatgctaatttatttat-caacagtagctacaacat-
||   ||| ||| | || || || |||||||| ||||||||||| || ||||| |||||||| |||||||| ||||| || ||||| || ||||||    || |  |  || || |  |  ||||||       |   || ||| || ||  |    ||  || |  | | ||| |  | |     ||  ||  | 
GTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAGgtt---catgtcttggcttaagaattattatttcagtattatacactatgcctatatgaatgtgtttgtgttggtatgtttctgtatcttctacttgaatttc

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttat----atactatctcaataccttatattt------cctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat--------------------------------------------------------------
||||  || ||| | || ||||| || |||||| | |||||||| ||||| ||||||||||| || ||||||||||||||  || | || |||||  | | |    ||  |||   || ||| | | | |      | ||    ||  || ||   | ||     | |    |  || || |   || |  | |   |                                                                   
GTCTACTCTATCCGCGAAGCTGCAGCAAACAACCTAAAGCGCCTCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttgagcattttatactaaaaccatctgtctgtttatcttattgttgatctatgtcaagtacctcacctataac--atctaatctccagctttggtcccttttctttggatatcactaaagctgcaaatattgagatctccagattgacctttatcatataaacag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G13320.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatactatctcaataccttatatttcctac---aactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat
||    |||||| | || ||||| || |||||  ||||||| ||||| |||||||||||||| || |||||||||||||||||| | |||||||||  | || | |   |    |||   ||| ||| | |    ||  | ||  |  |     |  |  |||  |   ||||| || |  |               
GTTCACTCAATCCGTGAAGCTGCTGCAAACAATCTGAAGCGTCTTGCTGAAGAGTTTGGTCCTGAATGGGCAATGCAGCATATAGTTCCTCAGgtttgtgtagaaatcttaagcatatagtatgttttcaattcaaatcgagcattttagctattggttattggagtatatttacttgttcag--------------

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT3G25800.1 (Arabidopsis thaliana), 5'ss of exon 9
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat
||    |||||| | |||||||| ||||||||  | ||||| ||||| || || |||||||| || ||||||||||| |||||| | ||||||||| | | || | | | |  |    |   |    |     || |  |||   || | | |   ||  |    ||| ||| |||  |||            
GTTCACTCAATCCGCGATGCTGCTGCTAACAATCTCAAGCGGCTTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAGgtt-tgtctagaatttttacaactttagaaaagtcagtgtctatcttgt---tagtgttaa--ttagtcgctattcattaatccgcag------------

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 9
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat-----
|| |  || ||  | |||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||  |||| || ||||||  | ||     | |  ||||      || || |||  | ||   |||  |  |||       |||   | |  |  | |||     |   |      |     
GTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAGAATTTGGTCCTGACTGGGCAATGCAGCACTTAATTCCACAGgtttgtctagtggttgtgacaat------taattgctattagtggcttgtaaaggatagtggatatgagtttcaaattctcatcttatttcattttggtttgtctc

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 11
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgct-aatttatttatcaacagta-gctacaacat-
|| | ||||||  | ||||| || ||||| ||  |||||||||||||||| || ||||| ||||| |||||||||||||| ||||| || |||||  ||   ||   || |   |||  |  |||     |   |   |      | ||| |   |||| || | ||  ||  ||  ||  ||    |   |||  
GTTTATTCAATTCGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAGGAATTTGGCCCAGATTGGGCAATGCAGCACATAATTCCACAGgtctttctgattacatat---tactgtgaattggtaccttttaaacaagcattgataaatatcttgctgttcaacatagatacaaagtgtctaatctgacaag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 5'ss of exon 9
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatt--tatatactatctcaatacc--ttatatttcctacaactgtgctgt-gcataatataatccttgatgctaatttatttatcaacagtagctac--aacat------------------------------------------------------------
|| |  || ||| |||| || || || |||||  | ||||| ||||| |||||||||||||| ||||||||| ||||||| || || || |||||  |   | ||||  ||   | |      ||| ||    || | |||    | |     | | |         |    || | ||||      | |     |||||                                                            
GTGTACTCTATCCGAGAGGCAGCTGCCAACAATCTCAAGCGTCTTGCCGAAGAGTTTGGTCCTGAGTGGGCATTGCAGCACATCATTCCACAGgtactcgctttataagattgtagtgaggactatcttggtaacgagtgtagaatcgtgggcttttacatacagcacaggcttgtctatctgtcagatccgttaaacatgagataactttcattcaattcctacgttattgttttctgatgaattggtgggacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156353|gb|DY401142.1|DY401142
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|37385657|gb|CF629982.1|CF629982
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGATAAGATCAACAACCCACACTATTTATACCGCATGCCGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|67016540|gb|CO445289.1|CO445289
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32847987|gb|CD987668.1|CD987668
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|4647623|gb|AI622698.1|AI622698
EST:     GGCAATGCAGCATATAATCCCTCAG                         GTGCTGGANAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: GGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|4886133|gb|AI677253.1|AI677253
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32929892|gb|CF034704.1|CF034704
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGCCGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|87157118|gb|DY401907.1|DY401907
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|31362531|gb|CD446888.1|CD446888
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|67017790|gb|CO446539.1|CO446539
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32933390|gb|CF038202.1|CF038202
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|31360934|gb|CD445291.1|CD445291
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|4966839|gb|AI691695.1|AI691695
EST:     TTGCA-AAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGACAAGATCAACAACCCACCCTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|149075393|gb|EE163907.2|EE163907
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTTTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|22546073|gb|BU098394.1|BU098394
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32847664|gb|CD987345.1|CD987345
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|21391215|gb|BQ529264.1|BQ529264
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|60346737|gb|DN213710.1|DN213710
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32939366|gb|CF044185.1|CF044185
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGGTCAACAACCCACACTATTTATACCGCATGACGATTCCG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|211384211|gb|FL475814.1|FL475814
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGWTCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|13557744|gb|BG549100.1|BG549100
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|12970893|gb|BG267211.1|BG267211
EST:     AGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAGCAACCCACACTATTTATACCGCATGACGATTCTG
genomic: AGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|211206779|gb|FL154155.1|FL154155
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|60348170|gb|DN215143.1|DN215143
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33103273|gb|CF063233.1|CF063233
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|24764008|gb|CA399177.1|CA399177
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|78025689|gb|DV494076.1|DV494076
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|60400129|gb|DN232936.1|DN232936
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32907549|gb|CF012362.1|CF012362
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|60344803|gb|DN211776.1|DN211776
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|149000780|gb|EE038003.2|EE038003
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|40303778|gb|CK348165.1|CK348165
EST:     TTGCAGAAGAGTTTGGTCCAGTGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|23357737|gb|BU645386.1|BU645386
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32928724|gb|CF033536.1|CF033536
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|6989629|gb|AW447842.1|AW447842
EST:     TGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGCAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|67022121|gb|CO450870.1|CO450870
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|60400542|gb|DN233349.1|DN233349
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33095990|gb|CF055984.1|CF055984
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32846843|gb|CD986524.1|CD986524
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|8930129|gb|BE224773.1|BE224773
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|67039515|gb|CO465770.1|CO465770
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|24767244|gb|CA402388.1|CA402388
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|20513030|gb|BQ280216.1|BQ280216
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|31355734|gb|CD440091.1|CD440091
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|24769523|gb|CA404652.1|CA404652
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|67033917|gb|CO462666.1|CO462666
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33102660|gb|CF062620.1|CF062620
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|13315895|gb|BG410243.1|BG410243
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 324

GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC


Block sizes: 47 (upstream exon), 48 (downstream exon)
Score: 302

GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 305

GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 252

GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTGCAGGCAATCTCCTTGCTAGCTCCTGTCATGGGTGCAGAAATCACCTGTC