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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat...

Basic information

species Zea mays
transcript GRMZM2G164352_T03
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatact-atctcaatacc--ttatatttcctacaactgtgc-tgtgcataatataatccttg-atgctaatttatttatc-aacagtagctacaacat-----------------------------------------------------------------------------
||   ||||||  | || || || |||||||||||||| |||||||| ||||| ||||| || |||||||| |||||||| ||||| ||||||||| || ||| | || |  | | ||      | ||  |  || |   |   |   ||| |  |  ||  || | | |  | |   | || |   | |  |  || ||                                                                             
GTTCATTCAATTCGCGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGACCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctatttgcttaatttattattaacgaaatgacacaccaacatatgtcaacattaattcgtctgtgtaggtttttgtgcatgtctagtggaaattgaaatatatgcttgttatatgctattacttcttctattctcctaagtgcaacttcagaagtatctatatggaatgctggaacag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatact-atctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaattt------atttatcaaca---gtagctacaacat-----------------------------------------------------------------
||   ||||||  | || || || |||||||||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||| ||||||||| || ||| |||| |  | | ||      |  |  |||| |         ||  ||  | || |   ||    |||      || | |  | |    |   | | | ||                                                                 
GTTCATTCAATTCGTGAAGCAGCTGCTAACAACTTGAAACGCCTTGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAGCACATAATTCCTCAGgttcatctatttacttaatttattattaacgaaatgatacaccaacatatgtcaacattaattcgtctgtgtgggtttttgtgcatgtcttgaaatatatgtttgctatatgctattaccttttctattctcccaagtgtaacttcagaagtatctatatggaatgtgtggaacag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA02G10790.2 (Glycine max), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcata-atataatccttgatgctaatttatttat-caacagtagctacaacat-
||   ||| ||| | || || || |||||||| ||||||||||| || ||||| |||||||| |||||||| ||||| || ||||| || ||||||    || |  |  || || |  |  ||||||       |   || ||| || ||  |    ||  || |  | | ||| |  | |     ||  ||  | 
GTTCATTCGATCCGTGAGGCAGCTGCTAACAATTTGAAGCGCCTAGCTGAAGAATTTGGTCCTGAGTGGGCTATGCAACACATAATTCCACAGgtt---catgtcttggcttaagaattattatttcagtattatacactatgcctatatgaatgtgtttgtgttggtatgtttctgtatcttctacttgaatttc

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G25490.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttat----atactatctcaataccttatattt------cctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat--------------------------------------------------------------
||||  || ||| | || ||||| || |||||| | |||||||| ||||| ||||||||||| || ||||||||||||||  || | || |||||  | | |    ||  |||   || ||| | | | |      | ||    ||  || ||   | ||     | |    |  || || |   || |  | |   |                                                                   
GTCTACTCTATCCGCGAAGCTGCAGCAAACAACCTAAAGCGCCTCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACTTAGTTCCCCAGgtattctttgagcattttatactaaaaccatctgtctgtttatcttattgttgatctatgtcaagtacctcacctataac--atctaatctccagctttggtcccttttctttggatatcactaaagctgcaaatattgagatctccagattgacctttatcatataaacag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT1G13320.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatactatctcaataccttatatttcctac---aactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat
||    |||||| | || ||||| || |||||  ||||||| ||||| |||||||||||||| || |||||||||||||||||| | |||||||||  | || | |   |    |||   ||| ||| | |    ||  | ||  |  |     |  |  |||  |   ||||| || |  |               
GTTCACTCAATCCGTGAAGCTGCTGCAAACAATCTGAAGCGTCTTGCTGAAGAGTTTGGTCCTGAATGGGCAATGCAGCATATAGTTCCTCAGgtttgtgtagaaatcttaagcatatagtatgttttcaattcaaatcgagcattttagctattggttattggagtatatttacttgttcag--------------

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: AT3G25800.1 (Arabidopsis thaliana), 5'ss of exon 9
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat
||    |||||| | |||||||| ||||||||  | ||||| ||||| || || |||||||| || ||||||||||| |||||| | ||||||||| | | || | | | |  |    |   |    |     || |  |||   || | | |   ||  |    ||| ||| |||  |||            
GTTCACTCAATCCGCGATGCTGCTGCTAACAATCTCAAGCGGCTTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAGgtt-tgtctagaatttttacaactttagaaaagtcagtgtctatcttgt---tagtgttaa--ttagtcgctattcattaatccgcag------------

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv01s0011g03280.t01 (Vitis vinifera), 5'ss of exon 9
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgtt-atttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgctaatttatttatcaacagtagctacaacat-----
|| |  || ||  | |||||||| ||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||  |||| || ||||||  | ||     | |  ||||      || || |||  | ||   |||  |  |||       |||   | |  |  | |||     |   |      |     
GTTTACTCCATTCGTGATGCTGCTGCTAACAACTTAAAGCGCCTTGCAGAAGAATTTGGTCCTGACTGGGCAATGCAGCACTTAATTCCACAGgtttgtctagtggttgtgacaat------taattgctattagtggcttgtaaaggatagtggatatgagtttcaaattctcatcttatttcattttggtttgtctc

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 11
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttatatactatctcaataccttatatttcctacaactgtgctgtgcataatataatccttgatgct-aatttatttatcaacagta-gctacaacat-
|| | ||||||  | ||||| || ||||| ||  |||||||||||||||| || ||||| ||||| |||||||||||||| ||||| || |||||  ||   ||   || |   |||  |  |||     |   |   |      | ||| |   |||| || | ||  ||  ||  ||  ||    |   |||  
GTTTATTCAATTCGTGATGCAGCTGCTAATAATGTGAAGCGCCTTGCAGAGGAATTTGGCCCAGATTGGGCAATGCAGCACATAATTCCACAGgtctttctgattacatat---tactgtgaattggtaccttttaaacaagcattgataaatatcttgctgttcaacatagatacaaagtgtctaatctgacaag

upper sequence: GRMZM2G164352_T03 (Zea mays), 5'ss of exon 10
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 5'ss of exon 9
GTCTTTTCAATCAGAGATGCTGCCGCTAACAACTTGAAGCGCCTTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatt--tatatactatctcaatacc--ttatatttcctacaactgtgctgt-gcataatataatccttgatgctaatttatttatcaacagtagctac--aacat------------------------------------------------------------
|| |  || ||| |||| || || || |||||  | ||||| ||||| |||||||||||||| ||||||||| ||||||| || || || |||||  |   | ||||  ||   | |      ||| ||    || | |||    | |     | | |         |    || | ||||      | |     |||||                                                            
GTGTACTCTATCCGAGAGGCAGCTGCCAACAATCTCAAGCGTCTTGCCGAAGAGTTTGGTCCTGAGTGGGCATTGCAGCACATCATTCCACAGgtactcgctttataagattgtagtgaggactatcttggtaacgagtgtagaatcgtgggcttttacatacagcacaggcttgtctatctgtcagatccgttaaacatgagataactttcattcaattcctacgttattgttttctgatgaattggtgggacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156353|gb|DY401142.1|DY401142
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32847987|gb|CD987668.1|CD987668
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32929892|gb|CF034704.1|CF034704
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGCCGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|87157118|gb|DY401907.1|DY401907
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32933390|gb|CF038202.1|CF038202
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|16925494|gb|BM078562.1|BM078562
EST:     AGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: AGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|22546073|gb|BU098394.1|BU098394
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32847664|gb|CD987345.1|CD987345
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32939366|gb|CF044185.1|CF044185
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGGTCAACAACCCACACTATTTATACCGCATGACGATTCCG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|13557744|gb|BG549100.1|BG549100
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33103273|gb|CF063233.1|CF063233
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|23357737|gb|BU645386.1|BU645386
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32928724|gb|CF033536.1|CF033536
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|32846843|gb|CD986524.1|CD986524
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|31355734|gb|CD440091.1|CD440091
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|33102660|gb|CF062620.1|CF062620
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
EST: gi|13315895|gb|BG410243.1|BG410243
EST:     TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAG                         GTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG
genomic: TTGCAGAAGAGTTTGGTCCAGAGTGGGCAATGCAGCATATAATCCCTCAGgttatttata ... gttttcccagGTGCTGGAGAAGATCAACAACCCACACTATTTATACCGCATGACGATTCTG